# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ae6A 166 1.72e-19 d.108.1.1 126600 2ob0A 170 3.25e-19 2cntA 160 4.34e-19 1tiqA 180 1.73e-18 d.108.1.1 107010 2b5gA 171 1.85e-18 d.108.1.1 127892 1vhsA 175 1.87e-18 d.108.1.1 100698 2j8mA 172 2.38e-18 2cy2A 174 4.23e-18 d.108.1.1 131016 2pdoA 144 4.37e-18 1kuxA 207 4.46e-18 d.108.1.1 73021 1yr0A 175 4.97e-18 d.108.1.1 123905 2fiaA 162 6.07e-18 d.108.1.1 133514 1mk4A 157 6.22e-18 d.108.1.1 84979 2q4vA 170 6.70e-18 d.108.1.1 139878 2ge3A 170 7.27e-18 d.108.1.1 135044 1yvoA 172 9.04e-18 d.108.1.1 124106 2reeA 224 9.71e-18 2fe7A 166 1.12e-17 d.108.1.1 133325 1l0cA 207 1.24e-17 d.108.1.1 73393 3blnA 143 1.31e-17 2i6cA 160 1.33e-17 d.108.1.1 137095 1s3zA 165 1.37e-17 d.108.1.1 105250 2euiA 153 1.95e-17 d.108.1.1 132387 2r7hA 177 1.99e-17 2dxqA 150 2.60e-17 2fl4A 149 2.86e-17 d.108.1.1 133706 3c26A 266 2.90e-17 2oh1A 179 2.97e-17 1gheA 177 2.99e-17 d.108.1.1 76222 1yreA 197 3.31e-17 d.108.1.1 123919 1nslA 184 5.29e-17 d.108.1.1 86137 1z4eA 153 5.90e-17 d.108.1.1 124431 1b87A 181 1.37e-16 d.108.1.1 40797 1y9kA 157 1.40e-16 d.108.1.1 122779 1z4rA 168 1.94e-16 d.108.1.1 124444 1qsmA 152 2.26e-16 d.108.1.1 40808 1on0A 158 2.27e-16 d.108.1.1 87095 1qsoA 149 2.51e-16 d.108.1.1 40812 1u6mA 199 2.55e-16 d.108.1.1 113069 2r1iA 172 2.73e-16 2o28A 184 2.77e-16 2ozgA 396 2.88e-16 1wwzA 159 3.49e-16 d.108.1.1 121380 1s7kA 182 4.02e-16 d.108.1.1 118878 1yvkA 163 4.48e-16 d.108.1.1 124101 1xebA 150 5.12e-16 d.108.1.1 115219 2a4nA 182 5.54e-16 d.108.1.1 126159 2i79A 172 6.75e-16 1q2yA 140 7.69e-16 d.108.1.1 95655 1yghA 164 9.10e-16 d.108.1.1 40802 1cjwA 166 1.04e-15 d.108.1.1 40818 1y7rA 133 1.05e-15 d.108.1.1 122716 1yx0A 159 1.06e-15 d.108.1.1 124168 1sqhA 312 1.37e-15 d.108.1.5 98966 1qstA 160 1.58e-15 d.108.1.1 40804 2fiwA 172 1.89e-15 d.108.1.1 133539 2hv2A 400 2.55e-15 2qecA 204 3.59e-15 2bswA 146 3.68e-15 d.108.1.1 129127 2atrA 138 4.08e-15 d.108.1.1 127305 1bo4A 168 5.19e-15 d.108.1.1 40798 1i1dA 161 5.31e-15 d.108.1.1 61526 2ft0A 235 6.99e-15 2q0yA 153 7.17e-15 1n71A 180 7.31e-15 d.108.1.1 85370 2c27A 315 9.26e-15 d.108.1.1 129659 2pc1A 201 1.03e-14 2fckA 181 1.04e-14 d.108.1.1 133272 2i00A 406 1.22e-14 1yk3A 210 1.31e-14 d.108.1.1 123493 1vkcA 158 1.37e-14 d.108.1.1 113663 1y9wA 140 1.70e-14 d.108.1.1 122783 1m4iA 181 2.51e-14 d.108.1.1 74457 2jdcA 146 2.66e-14 1i12A 160 9.39e-14 d.108.1.1 61515 2g3aA 152 9.39e-14 d.108.1.1 134557 2ganA 190 1.96e-13 d.108.1.1 134889 2ozhA 142 2.35e-13 2fsrA 195 5.99e-13 d.108.1.1 134036 1p0hA 318 7.98e-13 d.108.1.1 93866 2prbA 196 3.71e-11 2qmlA 198 6.76e-11 2z10A 194 2.82e-10 2aj6A 159 8.81e-06 d.108.1.1 126841 1ro5A 201 7.42e-05 d.108.1.3 105023 2g0bA 198 0.000284 2r98A 456 0.000997 1ne9A 335 0.005312 d.108.1.4,d.108.1.4 91839,91840 2q04A 211 0.009207 1iicA 422 0.01430 d.108.1.2,d.108.1.2 62422,62423 1xmtA 103 0.05770 d.108.1.1 115561 2pq8A 278 0.1036 2givA 295 0.1421 d.108.1.1 135253 1bob 320 0.2504 1yleA 342 0.2766 d.108.1.8 123647 1kzfA 230 0.3695 d.108.1.3 73354 1bobA 320 0.4789 d.108.1.1 40816 2p0wA 324 0.5684 1lrzA 426 0.9170 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1fy7A 278 1.795 d.108.1.1 40817 1svjA 156 1.840 d.220.1.1 106049 2d59A 144 3.677 c.2.1.8 131266 2hqyA 305 19.41 1pvmA 184 19.99 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1f1xA 322 21.60 d.32.1.3,d.32.1.3 83208,83209 1kllA 130 24.26 d.32.1.2 72720 2uubK 129 27.50 c.55.4.1 139942 2cxaA 256 27.50 d.108.1.6 130993 2go9A 161 27.65 1kw3B 292 29.94 d.32.1.3,d.32.1.3 77549,77550 2v0uA 146 30.09 1n9bA 265 30.39 e.3.1.1 85463 2rgqA 144 34.08 2yzqA 282 38.30 1ecsA 126 38.66 d.32.1.2 59407 1p0zA 131 38.90 d.110.6.1 93882 1o50A 157 39.30 d.37.1.1,d.37.1.1 92478,92479 3c8cA 240 47.34 2pdrA 149 49.32 1s6lA 212 50.68 1zoyA 622 50.87 2a8eA 220 53.03 d.296.1.1 126397 2ouxA 286 53.53 1qtoA 122 57.28 d.32.1.2 38494 1xkfA 133 59.14 d.37.1.1,d.37.1.1 122077,122078 1f9zA 135 59.44 d.32.1.1 38484 1m5q1 130 59.65 2vqeK 129 61.54 1ss4A 153 62.03 d.32.1.6 105976 2pjkA 178 62.80 2qqzA 126 68.11 1g13A 162 68.62 b.95.1.1 60194 1han 297 71.48 2c2iA 151 72.56 d.38.1.4 129670 2qcuA 501 73.17 2pd8A 149 73.29 2ehzA 302 74.91 1xtaA 221 76.18 2higA 487 78.96 1ct5A 256 79.81 c.1.6.2 28663 1yavA 159 81.11 d.37.1.1,d.37.1.1 116595,116596 1pn2A 280 81.49 d.38.1.4,d.38.1.4 94930,94931 2iugA 120 83.60 2pr5A 132 83.87 1f1uA 323 87.08 d.32.1.3,d.32.1.3 83200,83201 1c0pA 363 89.29 c.4.1.2,d.16.1.3 30647,37934 2a4xA 138 89.43 d.32.1.2 126166