# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ob0A 170 8.50e-16 2cntA 160 3.21e-15 2j8mA 172 3.52e-15 2ae6A 166 3.70e-15 d.108.1.1 126600 1tiqA 180 4.76e-15 d.108.1.1 107010 2cy2A 174 9.78e-15 d.108.1.1 131016 1yr0A 175 1.42e-14 d.108.1.1 123905 1mk4A 157 1.56e-14 d.108.1.1 84979 1vhsA 175 1.69e-14 d.108.1.1 100698 2ge3A 170 1.76e-14 d.108.1.1 135044 2i6cA 160 1.86e-14 d.108.1.1 137095 1yreA 197 2.20e-14 d.108.1.1 123919 2fiaA 162 2.30e-14 d.108.1.1 133514 3blnA 143 2.43e-14 1yvoA 172 2.43e-14 d.108.1.1 124106 1nslA 184 3.72e-14 d.108.1.1 86137 3c26A 266 4.52e-14 2oh1A 179 5.02e-14 1gheA 177 6.47e-14 d.108.1.1 76222 1kuxA 207 7.22e-14 d.108.1.1 73021 2r7hA 177 7.30e-14 1l0cA 207 7.61e-14 d.108.1.1 73393 2b5gA 171 9.73e-14 d.108.1.1 127892 2q4vA 170 1.11e-13 d.108.1.1 139878 2reeA 224 1.39e-13 2dxqA 150 2.98e-13 1z4rA 168 3.24e-13 d.108.1.1 124444 1s3zA 165 3.47e-13 d.108.1.1 105250 1s7kA 182 4.13e-13 d.108.1.1 118878 2euiA 153 4.59e-13 d.108.1.1 132387 2pdoA 144 4.60e-13 1y9kA 157 5.82e-13 d.108.1.1 122779 1b87A 181 6.00e-13 d.108.1.1 40797 2pc1A 201 6.84e-13 2o28A 184 1.04e-12 1qstA 160 1.20e-12 d.108.1.1 40804 2i79A 172 1.21e-12 2hv2A 400 1.34e-12 1yvkA 163 1.50e-12 d.108.1.1 124101 2qecA 204 1.52e-12 1u6mA 199 1.54e-12 d.108.1.1 113069 1xebA 150 1.61e-12 d.108.1.1 115219 1z4eA 153 1.63e-12 d.108.1.1 124431 1yghA 164 1.66e-12 d.108.1.1 40802 1yx0A 159 1.78e-12 d.108.1.1 124168 2fe7A 166 2.06e-12 d.108.1.1 133325 1wwzA 159 2.08e-12 d.108.1.1 121380 1cjwA 166 2.10e-12 d.108.1.1 40818 2fckA 181 2.34e-12 d.108.1.1 133272 2a4nA 182 2.42e-12 d.108.1.1 126159 1q2yA 140 2.50e-12 d.108.1.1 95655 1sqhA 312 2.86e-12 d.108.1.5 98966 1on0A 158 2.93e-12 d.108.1.1 87095 1qsmA 152 3.40e-12 d.108.1.1 40808 2ozgA 396 3.53e-12 2r1iA 172 4.05e-12 1qsoA 149 5.23e-12 d.108.1.1 40812 2c27A 315 5.75e-12 d.108.1.1 129659 2fiwA 172 5.87e-12 d.108.1.1 133539 2bswA 146 1.14e-11 d.108.1.1 129127 1yk3A 210 1.53e-11 d.108.1.1 123493 1y7rA 133 1.65e-11 d.108.1.1 122716 2ft0A 235 1.98e-11 1m4iA 181 2.60e-11 d.108.1.1 74457 1n71A 180 3.03e-11 d.108.1.1 85370 2jdcA 146 3.16e-11 1i1dA 161 4.75e-11 d.108.1.1 61526 2i00A 406 4.96e-11 2fl4A 149 5.09e-11 d.108.1.1 133706 2fsrA 195 6.35e-11 d.108.1.1 134036 1p0hA 318 1.40e-10 d.108.1.1 93866 2atrA 138 1.54e-10 d.108.1.1 127305 2q0yA 153 1.61e-10 1bo4A 168 1.97e-10 d.108.1.1 40798 1vkcA 158 2.31e-10 d.108.1.1 113663 2ganA 190 5.25e-10 d.108.1.1 134889 1i12A 160 9.82e-10 d.108.1.1 61515 2prbA 196 2.94e-09 1y9wA 140 3.74e-09 d.108.1.1 122783 2qmlA 198 5.98e-09 2g3aA 152 1.06e-08 d.108.1.1 134557 2ozhA 142 1.12e-08 2z10A 194 2.20e-08 1ro5A 201 0.000162 d.108.1.3 105023 2g0bA 198 0.000391 2aj6A 159 0.001367 d.108.1.1 126841 2r98A 456 0.001373 2q04A 211 0.02361 1iicA 422 0.02905 d.108.1.2,d.108.1.2 62422,62423 1ne9A 335 0.07940 d.108.1.4,d.108.1.4 91839,91840 2givA 295 0.4500 d.108.1.1 135253 2pq8A 278 0.6689 2p0wA 324 0.7631 1xmtA 103 1.151 d.108.1.1 115561 1bob 320 1.221 1bobA 320 1.408 d.108.1.1 40816 1yleA 342 1.558 d.108.1.8 123647 2hqyA 305 2.331 1fy7A 278 2.356 d.108.1.1 40817 1lrzA 426 15.38 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1p0zA 131 18.40 d.110.6.1 93882 1svjA 156 23.05 d.220.1.1 106049 3cvgA 294 31.00 2btfA 375 33.74 c.55.1.1,c.55.1.1 33429,33430 2a8eA 220 40.55 d.296.1.1 126397 2uubK 129 45.30 c.55.4.1 139942 1lvmA 229 48.58 b.47.1.3 78243 2d4pA 141 51.19 1kllA 130 54.86 d.32.1.2 72720 1pvmA 184 57.23 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1han 297 59.28 1gxrA 337 59.35 b.69.4.1 70722 2hm7A 310 61.01 2z2nA 299 61.47 2nwfA 141 63.82 1fp1D 372 65.09 a.4.5.29,c.66.1.12 59939,59940 2v0uA 146 72.70 3nul 130 75.50 1d4xA 375 75.79 c.55.1.1,c.55.1.1 59107,59108 2nvgA 141 78.14 2vqeK 129 80.66