# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ae6A 166 6.85e-19 d.108.1.1 126600 2ob0A 170 8.47e-19 2cntA 160 1.42e-18 2j8mA 172 1.42e-18 1yr0A 175 2.33e-18 d.108.1.1 123905 1vhsA 175 6.30e-18 d.108.1.1 100698 1tiqA 180 7.17e-18 d.108.1.1 107010 1mk4A 157 1.28e-17 d.108.1.1 84979 2fiaA 162 1.76e-17 d.108.1.1 133514 1yvoA 172 1.96e-17 d.108.1.1 124106 2b5gA 171 2.07e-17 d.108.1.1 127892 2ge3A 170 2.25e-17 d.108.1.1 135044 2cy2A 174 2.63e-17 d.108.1.1 131016 3blnA 143 3.89e-17 2i6cA 160 4.82e-17 d.108.1.1 137095 1kuxA 207 5.06e-17 d.108.1.1 73021 1nslA 184 5.52e-17 d.108.1.1 86137 1gheA 177 8.65e-17 d.108.1.1 76222 1yreA 197 9.12e-17 d.108.1.1 123919 2q4vA 170 9.37e-17 d.108.1.1 139878 2pdoA 144 1.59e-16 1l0cA 207 1.60e-16 d.108.1.1 73393 1z4rA 168 1.87e-16 d.108.1.1 124444 2dxqA 150 2.22e-16 2r7hA 177 2.24e-16 2reeA 224 2.24e-16 2oh1A 179 2.52e-16 2euiA 153 2.77e-16 d.108.1.1 132387 2fe7A 166 3.08e-16 d.108.1.1 133325 1s3zA 165 3.63e-16 d.108.1.1 105250 3c26A 266 5.25e-16 2i79A 172 5.47e-16 1xebA 150 6.29e-16 d.108.1.1 115219 1s7kA 182 9.94e-16 d.108.1.1 118878 1z4eA 153 1.05e-15 d.108.1.1 124431 1yghA 164 1.11e-15 d.108.1.1 40802 1qsmA 152 1.18e-15 d.108.1.1 40808 2hv2A 400 1.40e-15 1qsoA 149 1.48e-15 d.108.1.1 40812 1u6mA 199 1.53e-15 d.108.1.1 113069 1b87A 181 1.65e-15 d.108.1.1 40797 1yx0A 159 1.74e-15 d.108.1.1 124168 1q2yA 140 1.96e-15 d.108.1.1 95655 1yvkA 163 2.00e-15 d.108.1.1 124101 1y9kA 157 2.09e-15 d.108.1.1 122779 2o28A 184 2.28e-15 2ozgA 396 2.47e-15 1wwzA 159 2.61e-15 d.108.1.1 121380 1qstA 160 3.08e-15 d.108.1.1 40804 1on0A 158 3.17e-15 d.108.1.1 87095 1cjwA 166 5.53e-15 d.108.1.1 40818 2qecA 204 6.22e-15 2bswA 146 7.31e-15 d.108.1.1 129127 2a4nA 182 1.03e-14 d.108.1.1 126159 1y7rA 133 1.03e-14 d.108.1.1 122716 1sqhA 312 1.36e-14 d.108.1.5 98966 2r1iA 172 1.51e-14 2fckA 181 1.54e-14 d.108.1.1 133272 2jdcA 146 1.62e-14 2pc1A 201 1.63e-14 2fl4A 149 2.05e-14 d.108.1.1 133706 1bo4A 168 2.10e-14 d.108.1.1 40798 1m4iA 181 3.12e-14 d.108.1.1 74457 2fiwA 172 3.30e-14 d.108.1.1 133539 2q0yA 153 3.43e-14 2i00A 406 3.89e-14 1n71A 180 4.99e-14 d.108.1.1 85370 2atrA 138 5.54e-14 d.108.1.1 127305 1i1dA 161 5.97e-14 d.108.1.1 61526 1yk3A 210 8.16e-14 d.108.1.1 123493 2c27A 315 9.39e-14 d.108.1.1 129659 2ft0A 235 1.98e-13 2ganA 190 5.18e-13 d.108.1.1 134889 2fsrA 195 5.85e-13 d.108.1.1 134036 1vkcA 158 6.05e-13 d.108.1.1 113663 1i12A 160 6.99e-13 d.108.1.1 61515 1y9wA 140 8.58e-13 d.108.1.1 122783 2ozhA 142 9.33e-12 1p0hA 318 1.18e-11 d.108.1.1 93866 2g3aA 152 1.65e-11 d.108.1.1 134557 2prbA 196 8.34e-11 2qmlA 198 4.34e-10 2z10A 194 1.02e-09 1ro5A 201 1.34e-05 d.108.1.3 105023 2aj6A 159 3.38e-05 d.108.1.1 126841 2g0bA 198 0.000118 2r98A 456 0.000301 2q04A 211 0.009842 1iicA 422 0.01470 d.108.1.2,d.108.1.2 62422,62423 1ne9A 335 0.01806 d.108.1.4,d.108.1.4 91839,91840 1bob 320 0.06159 2p0wA 324 0.1260 1bobA 320 0.1303 d.108.1.1 40816 1xmtA 103 0.1828 d.108.1.1 115561 2pq8A 278 0.1919 2givA 295 0.2647 d.108.1.1 135253 1yleA 342 0.5773 d.108.1.8 123647 1svjA 156 0.8766 d.220.1.1 106049 1kzfA 230 1.506 d.108.1.3 73354 1fy7A 278 1.764 d.108.1.1 40817 2hqyA 305 3.155 1lrzA 426 12.91 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1p0zA 131 16.16 d.110.6.1 93882 1han 297 22.40 2ehzA 302 23.96 2v0uA 146 24.93 1f1xA 322 29.38 d.32.1.3,d.32.1.3 83208,83209 1iznB 277 33.17 e.43.1.2 83848 2cvbA 188 35.85 c.47.1.10 130859 1ecsA 126 37.85 d.32.1.2 59407 2z2nA 299 38.02 2cvlA 124 38.74 d.79.1.1 130871 2uubK 129 39.96 c.55.4.1 139942 2a8eA 220 43.58 d.296.1.1 126397 1amp 291 46.46 1kllA 130 49.87 d.32.1.2 72720 1x25A 128 52.12 d.79.1.1 121619 1qd9A 124 52.13 d.79.1.1 39758 2au3A 407 57.68 1lvmA 229 59.41 b.47.1.3 78243 2hyxA 352 62.17 1qipA 183 66.24 d.32.1.1 38470 2b33A 140 67.19 d.79.1.1 127765 1qtoA 122 68.82 d.32.1.2 38494 2mprA 421 69.78 f.4.3.2 43788 1lkdA 297 70.07 d.32.1.3,d.32.1.3 78059,78060 2citA 282 70.99 c.1.8.3 130499 2hp1A 432 71.75 1wzaA 488 78.79 b.71.1.1,c.1.8.1 121489,121490 2cxaA 256 79.56 d.108.1.6 130993 1goxA 369 84.19 c.1.4.1 28607 2bcjB 340 84.75 b.69.4.1 128289 1pvmA 184 84.93 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1oniA 137 85.82 d.79.1.1 87144 2rgqA 144 86.43 2h14A 317 87.30 1qahA 136 87.96 d.79.1.1 96338 2pm7B 297 89.31 2yzqA 282 89.84 1f1uA 323 89.99 d.32.1.3,d.32.1.3 83200,83201