# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2j8mA 172 1.00e-15 2cntA 160 2.57e-15 2ge3A 170 2.62e-15 d.108.1.1 135044 1tiqA 180 2.79e-15 d.108.1.1 107010 2ae6A 166 3.19e-15 d.108.1.1 126600 2ob0A 170 8.80e-15 1yr0A 175 2.29e-14 d.108.1.1 123905 1yvoA 172 2.62e-14 d.108.1.1 124106 1s3zA 165 2.82e-14 d.108.1.1 105250 1vhsA 175 3.43e-14 d.108.1.1 100698 2cy2A 174 6.47e-14 d.108.1.1 131016 2oh1A 179 8.61e-14 1z4eA 153 8.96e-14 d.108.1.1 124431 2fe7A 166 1.27e-13 d.108.1.1 133325 2pdoA 144 1.42e-13 1nslA 184 1.61e-13 d.108.1.1 86137 2dxqA 150 1.81e-13 1gheA 177 2.36e-13 d.108.1.1 76222 1mk4A 157 2.48e-13 d.108.1.1 84979 2r7hA 177 3.08e-13 2i79A 172 4.79e-13 2fckA 181 7.18e-13 d.108.1.1 133272 1yreA 197 7.28e-13 d.108.1.1 123919 2b5gA 171 1.37e-12 d.108.1.1 127892 2q4vA 170 1.66e-12 d.108.1.1 139878 1s7kA 182 1.67e-12 d.108.1.1 118878 2fiwA 172 3.10e-12 d.108.1.1 133539 2pc1A 201 3.26e-12 2qecA 204 3.35e-12 2fiaA 162 6.16e-12 d.108.1.1 133514 1u6mA 199 7.47e-12 d.108.1.1 113069 3c26A 266 1.02e-11 1kuxA 207 1.38e-11 d.108.1.1 73021 2euiA 153 1.57e-11 d.108.1.1 132387 1cjwA 166 1.58e-11 d.108.1.1 40818 1l0cA 207 1.62e-11 d.108.1.1 73393 3blnA 143 1.92e-11 1i1dA 161 2.02e-11 d.108.1.1 61526 1qsmA 152 2.52e-11 d.108.1.1 40808 1vkcA 158 2.84e-11 d.108.1.1 113663 2o28A 184 3.03e-11 2c27A 315 3.23e-11 d.108.1.1 129659 2i6cA 160 3.56e-11 d.108.1.1 137095 1qsoA 149 5.83e-11 d.108.1.1 40812 1sqhA 312 5.92e-11 d.108.1.5 98966 1yk3A 210 7.30e-11 d.108.1.1 123493 1i12A 160 8.04e-11 d.108.1.1 61515 2ft0A 235 8.45e-11 1on0A 158 1.40e-10 d.108.1.1 87095 2r1iA 172 1.67e-10 2ozgA 396 1.76e-10 2bswA 146 2.11e-10 d.108.1.1 129127 2reeA 224 3.10e-10 2prbA 196 6.14e-10 1p0hA 318 8.98e-10 d.108.1.1 93866 2q0yA 153 1.05e-09 2z10A 194 1.05e-09 2fl4A 149 1.07e-09 d.108.1.1 133706 1wwzA 159 1.94e-09 d.108.1.1 121380 2i00A 406 2.43e-09 2hv2A 400 2.52e-09 1y9kA 157 2.74e-09 d.108.1.1 122779 1qstA 160 2.94e-09 d.108.1.1 40804 1yx0A 159 3.68e-09 d.108.1.1 124168 1yvkA 163 4.46e-09 d.108.1.1 124101 2jdcA 146 6.14e-09 1bo4A 168 7.54e-09 d.108.1.1 40798 2qmlA 198 1.06e-08 2fsrA 195 1.56e-08 d.108.1.1 134036 1z4rA 168 1.77e-08 d.108.1.1 124444 1m4iA 181 3.11e-08 d.108.1.1 74457 1y7rA 133 4.48e-08 d.108.1.1 122716 1xebA 150 7.84e-08 d.108.1.1 115219 2ganA 190 8.19e-08 d.108.1.1 134889 1yghA 164 1.16e-07 d.108.1.1 40802 1q2yA 140 1.58e-07 d.108.1.1 95655 2r98A 456 1.80e-07 2atrA 138 2.85e-07 d.108.1.1 127305 1n71A 180 2.86e-07 d.108.1.1 85370 1b87A 181 3.44e-07 d.108.1.1 40797 2g3aA 152 8.04e-07 d.108.1.1 134557 1y9wA 140 1.58e-06 d.108.1.1 122783 2a4nA 182 1.68e-06 d.108.1.1 126159 2ozhA 142 1.37e-05 1ro5A 201 2.08e-05 d.108.1.3 105023 2g0bA 198 0.000244 2aj6A 159 0.000287 d.108.1.1 126841 1yleA 342 0.002081 d.108.1.8 123647 2q04A 211 0.004921 1ne9A 335 0.01475 d.108.1.4,d.108.1.4 91839,91840 1lrzA 426 0.01629 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1iicA 422 0.01702 d.108.1.2,d.108.1.2 62422,62423 1bob 320 0.06560 2d4pA 141 0.07428 1kzfA 230 0.09346 d.108.1.3 73354 1bobA 320 0.2009 d.108.1.1 40816 1xmtA 103 1.343 d.108.1.1 115561 2p0wA 324 1.825 2uubK 129 3.516 c.55.4.1 139942 1svjA 156 4.812 d.220.1.1 106049 2hqyA 305 5.798 1fjgK 129 6.405 c.55.4.1 33733 1mml 265 6.945 2vqeK 129 8.550 2givA 295 8.877 d.108.1.1 135253 1mmlA 265 10.60 e.8.1.2 43015 1or0B 528 10.89 1k47A 337 11.25 d.14.1.5,d.58.26.4 72040,72041 2pq8A 278 11.84 2qlcA 126 13.49 2cxaA 256 14.31 d.108.1.6 130993 1u6rA 380 14.93 a.83.1.1,d.128.1.2 119600,119601 1i52A 236 15.04 c.68.1.13 61767 2freA 200 15.53 d.90.1.1 133985 2d59A 144 16.18 c.2.1.8 131266 1a79A 171 18.52 c.52.2.1,d.75.1.1 33340,39739 1a62A 130 18.89 a.140.3.1,b.40.4.5 64708,64709 1a62 130 19.56 2arfA 165 20.03 2hvwA 184 24.63 2ae5B 528 25.51 1g8fA 511 25.82 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1d4xA 375 26.30 c.55.1.1,c.55.1.1 59107,59108 2btfA 375 27.08 c.55.1.1,c.55.1.1 33429,33430 2gl6A 392 27.64 1qh4A 380 28.01 a.83.1.1,d.128.1.2 18462,41197 2qqzA 126 28.78 2hl0A 143 33.17 1vrpA 381 33.94 a.83.1.1,d.128.1.2 120473,120474 1xzpB 150 36.43 d.250.1.2 116257 1fxoA 293 36.68 c.68.1.6 34524 1gsa 316 37.37 1x6vA 630 39.01 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 3b8mA 280 39.44 1zfjA 491 41.04 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 1zlqA 502 42.76 c.94.1.1 125253 1qipA 183 43.14 d.32.1.1 38470 2pwyA 258 44.25 2yvyA 278 44.41 2yziA 138 45.29 1fm2B 520 47.06 1eg7A 557 47.25 c.37.1.10 32241 2fr1A 486 47.33 c.2.1.2,c.2.1.2 133961,133962 1y2qA 143 48.72 1uiuA 502 50.19 c.94.1.1 99434 2eggA 297 50.70 1ve0A 134 52.89 1xvlA 321 53.02 c.92.2.2 122380 2ouxA 286 53.27 1p77A 272 54.86 c.2.1.7,c.58.1.5 94214,94215 1f89A 291 55.82 d.160.1.1 64988 1fy7A 278 57.45 d.108.1.1 40817 2b8eA 273 63.28 c.108.1.7,d.220.1.1 128068,128069 1y791 680 64.53 2cu5A 129 65.05 2o5cA 659 65.81 1hkkA 364 66.57 c.1.8.5,d.26.3.1 90634,90635 1ne6A 283 67.62 b.82.3.2,b.82.3.2 91831,91832 1a8vA 121 68.22 a.140.3.1,b.40.4.5 64712,64713 2a1rA 430 68.26 2uv4A 152 69.55 3proC 166 69.89 d.52.1.1,d.52.1.1 38812,38813 2db1A 118 70.43 2pg9A 337 70.48 1oheA 348 71.15 c.45.1.1,c.45.1.1 87013,87014 2dvkA 188 72.96 1d6mA 653 76.17 e.10.1.1 43248 1gg3A 279 76.19 a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 2jnsA 90 76.50 2bjuA 453 76.85 b.50.1.2 128633 1hwxA 501 77.99 c.2.1.7,c.58.1.1 30250,33898 1igs 248 78.74 2citA 282 79.60 c.1.8.3 130499 1wlsA 328 79.91 2c07A 285 80.96 c.2.1.2 129577 1zwxA 301 81.44 d.151.1.3 125752 1j31A 262 85.42 d.160.1.2 90808 1s48A 609 89.51 e.8.1.4 98475