# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	9.03e-12		
1azpA	66	7.031	b.34.13.1	37467
2esnA	310	7.708	a.4.5.37,c.94.1.1	132333,132334
1bnzA	64	9.054	b.34.13.1	37468
1lwyA	324	9.165	a.96.1.3,d.129.1.2	78285,78286
1k82A	268	11.05	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
1c8cA	64	12.20	b.34.13.1	59084
1g6eA	87	13.00	b.11.1.6	60317
1bf4A	63	15.55	b.34.13.1	37461
1xyiA	66	15.73		
2vacA	134	18.54		
1f2tA	149	22.47	c.37.1.12	32373
1yllA	200	22.91	b.82.1.17	123653
1ebdA	455	23.31	c.3.1.5,c.3.1.5,d.87.1.1	30577,30578,40210
1ko9A	345	23.91	a.96.1.3,d.129.1.2	68717,68718
2yzsA	315	24.29		
1a0p	290	24.69		
1r2zA	274	27.53	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1xo0A	324	28.32	a.60.9.1,d.163.1.1	115674,115675
2gf3A	389	34.93	c.3.1.2,d.16.1.3	135070,135071
2pltA	98	36.03	b.6.1.1	22862
2qh7A	76	37.27		
1l1zA	274	39.15	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
1bbxC	63	40.05	b.34.13.1	37465
1reqA	727	40.39	c.1.19.1,c.23.6.1	29620,31247
1jnrA	643	42.33	a.7.3.1,c.3.1.4,d.168.1.1	66966,66967,66968
2omkA	231	44.86		
2nwbA	400	46.51		
1l9cA	389	47.85	c.3.1.2,d.16.1.3	77815,77816
1sf9A	128	48.17	b.34.15.1	98831
2cyeA	133	48.55	d.38.1.1	131021
1q3iA	214	50.04	d.220.1.1	104524
1a0pA	290	50.66	a.60.9.1,d.163.1.1	18105,42165
1wpgA	994	52.93	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
1ebmA	317	55.37	a.96.1.3,d.129.1.2	18751,41300
2dj6A	115	56.63		
2od0A	105	62.91		
1dynA	125	63.77	b.55.1.1	26955
1dpeA	507	64.04	c.94.1.1	35799
2fvgA	340	66.50	b.49.3.1,c.56.5.4	134201,134202
1jwqA	179	68.41	c.56.5.6	90921
1dfuP	94	68.67	b.53.1.1	26936
2qe7H	135	69.12		
1m1hA	248	72.06	b.114.1.1,d.58.42.1	78415,78416
1h6hA	143	73.07	d.189.1.1	65681
2j01V	101	74.41		
1zcbA	362	78.23	a.66.1.1,c.37.1.8	124901,124902
1zq9A	285	78.47	c.66.1.24	125505
2q18X	293	83.22		
1oroA	213	83.76	c.61.1.1	34093