# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	6.24e-11		
1azpA	66	4.653	b.34.13.1	37467
1bnzA	64	6.488	b.34.13.1	37468
1c8cA	64	6.969	b.34.13.1	59084
1lwyA	324	8.574	a.96.1.3,d.129.1.2	78285,78286
1xyiA	66	9.171		
1bf4A	63	10.05	b.34.13.1	37461
1g6eA	87	11.43	b.11.1.6	60317
2esnA	310	15.60	a.4.5.37,c.94.1.1	132333,132334
2qe7H	135	17.85		
1zcbA	362	19.67	a.66.1.1,c.37.1.8	124901,124902
2vacA	134	20.80		
1ko9A	345	21.93	a.96.1.3,d.129.1.2	68717,68718
2yzsA	315	22.98		
1jwqA	179	26.36	c.56.5.6	90921
1k82A	268	27.59	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
1a0p	290	28.41		
1f2tA	149	29.05	c.37.1.12	32373
1bbxC	63	33.43	b.34.13.1	37465
2gf3A	389	34.12	c.3.1.2,d.16.1.3	135070,135071
1wpgA	994	35.04	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
1ebdA	455	36.14	c.3.1.5,c.3.1.5,d.87.1.1	30577,30578,40210
1dfuP	94	36.28	b.53.1.1	26936
1l9cA	389	38.68	c.3.1.2,d.16.1.3	77815,77816
1m1hA	248	43.52	b.114.1.1,d.58.42.1	78415,78416
1xo0A	324	46.71	a.60.9.1,d.163.1.1	115674,115675
1yfnA	118	48.11	b.136.1.1	123080
1ebmA	317	51.12	a.96.1.3,d.129.1.2	18751,41300
1a0pA	290	52.03	a.60.9.1,d.163.1.1	18105,42165
2pltA	98	55.81	b.6.1.1	22862
2nwbA	400	58.69		
1r2zA	274	60.85	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1q3iA	214	62.60	d.220.1.1	104524
2e5yA	133	67.32		
1mo7A	213	67.84	d.220.1.1	85028
1dynA	125	68.14	b.55.1.1	26955
2j01V	101	75.08		
1el5A	389	77.39	c.3.1.2,d.16.1.3	30369,37937
1fs0E	138	77.75	a.2.10.1,b.93.1.1	59997,59998
2dynA	122	77.96	b.55.1.1	26957
2vluA	122	79.73		
2olnA	397	80.17		
2q35A	243	80.89		
1o8uA	257	84.07	c.14.1.3	81194
2od0A	105	85.72		
1wnyA	186	88.51		
1l1zA	274	88.84	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913