# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bs1A 103 3.00e-15 2yzsA 315 1.066 1azpA 66 1.478 b.34.13.1 37467 1c8cA 64 1.986 b.34.13.1 59084 1bnzA 64 2.619 b.34.13.1 37468 2esnA 310 3.142 a.4.5.37,c.94.1.1 132333,132334 1yfnA 118 3.445 b.136.1.1 123080 1k82A 268 4.386 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 1xyiA 66 4.793 1r2zA 274 4.918 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1bf4A 63 5.359 b.34.13.1 37461 1l1zA 274 6.878 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 2omkA 231 7.965 1ebdA 455 9.335 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 3b79A 129 10.02 1ox8A 107 10.16 b.136.1.1 93671 2e5yA 133 11.86 1ou8A 111 12.12 b.136.1.1 93543 1dynA 125 12.22 b.55.1.1 26955 2cyeA 133 12.29 d.38.1.1 131021 1j9qA 341 13.57 b.6.1.3,b.6.1.3 62765,62766 1ko9A 345 14.60 a.96.1.3,d.129.1.2 68717,68718 1aqt 138 16.91 1lwyA 324 17.94 a.96.1.3,d.129.1.2 78285,78286 2vacA 134 18.89 1jwqA 179 21.02 c.56.5.6 90921 1mo7A 213 21.91 d.220.1.1 85028 1xtpA 254 22.96 c.66.1.42 116031 2pltA 98 23.14 b.6.1.1 22862 1q3iA 214 23.35 d.220.1.1 104524 2gf3A 389 24.81 c.3.1.2,d.16.1.3 135070,135071 1bbxC 63 25.22 b.34.13.1 37465 1yzxA 226 28.48 1g6eA 87 28.88 b.11.1.6 60317 1xsjA 778 29.55 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 2qe7H 135 30.35 1sqwA 188 32.03 b.122.1.1,d.17.6.3 119033,119034 1wp5A 323 33.03 b.68.10.1 114780 1ebmA 317 33.67 a.96.1.3,d.129.1.2 18751,41300 1y6uA 70 34.62 1zvtA 256 35.38 1l9cA 389 35.41 c.3.1.2,d.16.1.3 77815,77816 2cx5A 158 36.71 1dfuP 94 36.92 b.53.1.1 26936 1o8uA 257 39.60 c.14.1.3 81194 1wnyA 186 39.73 1b37B 472 41.61 c.3.1.2,d.16.1.5 30390,37954 2od0A 105 42.64 1ee8A 266 42.80 a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 2pl9D 20 43.00 2olnA 397 44.18 1wtaA 275 44.37 2faoA 309 46.15 1ng4A 390 46.32 c.3.1.2,d.16.1.3 85666,85667 2dyoA 297 48.38 1el5A 389 48.39 c.3.1.2,d.16.1.3 30369,37937 2cohA 202 48.45 a.4.5.4,b.82.3.2 130677,130678 1m1hA 248 50.09 b.114.1.1,d.58.42.1 78415,78416 2ix4A 431 51.40 c.95.1.1,c.95.1.1 137759,137760 2g3rA 123 53.57 b.34.9.1,b.34.9.1 134570,134571 1ryiA 382 53.63 c.3.1.2,d.16.1.3 118813,118814 1m6iA 493 54.69 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1eu3A 210 54.81 b.40.2.2,d.15.6.1 25206,37795 1ug1A 92 55.14 b.34.2.1 99360 1ywyA 74 56.42 b.55.2.1 124166 1gesA 450 56.71 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 2jaeA 489 57.29 1t3bA 211 57.74 c.47.1.9,d.17.3.1 106341,106342 1zi0A 307 58.16 1n0wB 35 58.40 j.97.1.1 79773 1b5qA 472 58.43 c.3.1.2,d.16.1.5 30404,37968 1xo0A 324 59.97 a.60.9.1,d.163.1.1 115674,115675 2bvfA 459 60.50 2nwbA 400 61.48 2ijaA 295 61.57 2v3aA 384 65.06 2j01V 101 65.55 1tdzA 272 66.12 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1gv4A 528 66.18 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 1wpgA 994 66.33 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 114806,114807,114808,114809 1fs0E 138 66.63 a.2.10.1,b.93.1.1 59997,59998 2govA 195 67.12 d.60.1.4 135447 1tqyA 424 67.19 c.95.1.1,c.95.1.1 107245,107246 2qqrA 118 67.32 1yifA 533 68.50 b.29.1.23,b.67.2.1 123283,123284 2ra2A 64 68.60 1afqC 96 68.68 1r4wA 226 68.84 c.47.1.13 97050 2jn0A 61 70.26 1oqkA 97 70.28 b.137.1.1 93419 1ri5A 298 70.97 c.66.1.34 97502 1q7hA 153 71.39 b.122.1.1,d.17.6.2 96042,96043 1jeyB 565 72.11 b.131.1.2,c.62.1.4 90372,90373 1tqyB 415 72.67 c.95.1.1,c.95.1.1 107247,107248 2j0aA 280 73.17 1jj2W 91 73.57 d.29.1.1 63108 1pjjA 271 73.80 a.156.1.2,b.113.1.1,g.39.1.8 104164,104165,104166 2d9zA 129 74.33 1tifA 78 74.86 d.15.8.1 37836 2cduA 452 75.04 1zcbA 362 75.79 a.66.1.1,c.37.1.8 124901,124902 1xd5A 112 76.28 b.78.1.1 115155 2c9hA 444 78.84 2zbwA 335 79.52 1o22A 170 80.43 d.238.1.1 86557 1k0eA 453 84.77 d.161.1.1 67938 1suuA 312 84.89 b.68.10.1 99006 1cuk 203 86.41 1j9bA 141 86.78 c.47.1.12 66459 1j3nA 408 87.15 c.95.1.1,c.95.1.1 84074,84075