# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bs1A 103 2.38e-11 1k82A 268 3.994 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 2esnA 310 5.656 a.4.5.37,c.94.1.1 132333,132334 1azpA 66 6.078 b.34.13.1 37467 1bnzA 64 6.775 b.34.13.1 37468 1r2zA 274 7.579 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 2yzsA 315 7.796 1c8cA 64 9.030 b.34.13.1 59084 1l1zA 274 9.116 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1bf4A 63 13.99 b.34.13.1 37461 1xyiA 66 18.12 1ebdA 455 25.79 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 2od0A 105 30.20 1jwqA 179 30.63 c.56.5.6 90921 2vacA 134 31.52 1f2tA 149 32.15 c.37.1.12 32373 1uwdA 103 33.96 d.52.8.2 113447 1zcbA 362 36.18 a.66.1.1,c.37.1.8 124901,124902 1xo0A 324 42.60 a.60.9.1,d.163.1.1 115674,115675 1hmt 132 42.72 1bbxC 63 44.58 b.34.13.1 37465 2qh7A 76 48.21 1ko9A 345 55.23 a.96.1.3,d.129.1.2 68717,68718 2j01V 101 57.22 1ee8A 266 57.74 a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 2jaeA 489 59.42 1mdc 133 59.90 1b56A 135 60.48 b.60.1.2 27183 1a0p 290 61.06 2cx5A 158 61.28 1lwyA 324 61.57 a.96.1.3,d.129.1.2 78285,78286 1sg5A 86 64.21 b.137.1.2 118960 2cohA 202 65.66 a.4.5.4,b.82.3.2 130677,130678 1g6eA 87 67.01 b.11.1.6 60317 2r7dA 469 67.57 1opbA 135 67.76 b.60.1.2 27216 1gesA 450 67.77 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 2gf3A 389 70.24 c.3.1.2,d.16.1.3 135070,135071 1yfnA 118 71.28 b.136.1.1 123080 1jnrA 643 71.32 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1svsA 353 72.52 c.37.1.8 106051 1k0eA 453 72.80 d.161.1.1 67938 1o22A 170 72.81 d.238.1.1 86557 1ifqA 138 73.52 d.110.4.1 62350 1ryiA 382 74.30 c.3.1.2,d.16.1.3 118813,118814 1yzxA 226 74.97 1oqkA 97 77.33 b.137.1.1 93419 2qqrA 118 77.52 1reqA 727 77.57 c.1.19.1,c.23.6.1 29620,31247 1zq9A 285 78.67 c.66.1.24 125505 1b9wA 89 79.76 g.3.11.4,g.3.11.4 44334,44335 2cduA 452 79.98 1xsjA 778 84.10 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 1ng4A 390 84.24 c.3.1.2,d.16.1.3 85666,85667 3cnuA 116 84.62 2yx0A 342 84.69 1fecA 490 84.85 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1lpjA 133 85.23 b.60.1.2 78123 1t5yA 190 89.43 b.122.1.1,d.17.6.3 106495,106496 2cyeA 133 89.74 d.38.1.1 131021