# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	1.27e-12		
2esnA	310	2.528	a.4.5.37,c.94.1.1	132333,132334
1k82A	268	6.825	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
1lwyA	324	8.558	a.96.1.3,d.129.1.2	78285,78286
2yzsA	315	17.63		
1c8cA	64	19.61	b.34.13.1	59084
2vacA	134	19.80		
1g6eA	87	20.41	b.11.1.6	60317
1azpA	66	20.73	b.34.13.1	37467
2fvgA	340	20.93	b.49.3.1,c.56.5.4	134201,134202
1jwqA	179	21.09	c.56.5.6	90921
1ko9A	345	21.22	a.96.1.3,d.129.1.2	68717,68718
1r2zA	274	21.46	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1bnzA	64	21.97	b.34.13.1	37468
1l1zA	274	25.28	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
1zcbA	362	25.99	a.66.1.1,c.37.1.8	124901,124902
2od0A	105	29.12		
1f2tA	149	29.55	c.37.1.12	32373
1a0p	290	33.00		
2yx0A	342	36.79		
1bf4A	63	37.43	b.34.13.1	37461
2r7dA	469	37.78		
1yfnA	118	38.54	b.136.1.1	123080
1ebdA	455	40.02	c.3.1.5,c.3.1.5,d.87.1.1	30577,30578,40210
2omkA	231	40.39		
2cyeA	133	46.03	d.38.1.1	131021
1xo0A	324	48.24	a.60.9.1,d.163.1.1	115674,115675
1xyiA	66	49.61		
1m1hA	248	50.45	b.114.1.1,d.58.42.1	78415,78416
2qh7A	76	51.38		
1reqA	727	53.28	c.1.19.1,c.23.6.1	29620,31247
2j0aA	280	53.60		
2cohA	202	56.15	a.4.5.4,b.82.3.2	130677,130678
2vluA	122	56.43		
1i52A	236	57.39	c.68.1.13	61767
1yllA	200	57.62	b.82.1.17	123653
2cx5A	158	58.14		
1a0pA	290	59.86	a.60.9.1,d.163.1.1	18105,42165
1vgwA	231	60.80	c.68.1.13	100612
2pltA	98	63.36	b.6.1.1	22862
1yzxA	226	64.22		
1zq9A	285	64.29	c.66.1.24	125505
1uwdA	103	65.22	d.52.8.2	113447
1zynA	202	65.71	c.47.1.2,c.47.1.2	125838,125839
2b3yA	888	69.88	c.8.2.1,c.83.1.1	127803,127804
2govA	195	74.64	d.60.1.4	135447
2pl9D	20	75.02		
2occI	73	76.24	f.23.3.1	43523
1svsA	353	79.12	c.37.1.8	106051
1dm9A	133	79.61	d.66.1.3	39560
1v47A	349	79.86	b.122.1.3,c.26.1.5	100292,100293
1bbxC	63	80.34	b.34.13.1	37465
1b9wA	89	80.71	g.3.11.4,g.3.11.4	44334,44335
1ryiA	382	80.93	c.3.1.2,d.16.1.3	118813,118814
1oroA	213	81.12	c.61.1.1	34093
3b7nA	320	81.52		
1dynA	125	85.07	b.55.1.1	26955
1auaA	296	86.22	a.5.3.1,c.13.1.1	16290,30882
1yloA	348	86.84	b.49.3.1,c.56.5.4	123659,123660
1jnrA	643	87.38	a.7.3.1,c.3.1.4,d.168.1.1	66966,66967,66968
2qe7H	135	88.83		
2qqrA	118	89.12