# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	4.04e-12		
2esnA	310	2.377	a.4.5.37,c.94.1.1	132333,132334
1k82A	268	7.353	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
1r2zA	274	14.39	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
2yzsA	315	17.87		
1l1zA	274	18.46	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
1lwyA	324	19.85	a.96.1.3,d.129.1.2	78285,78286
2vacA	134	20.20		
1azpA	66	21.92	b.34.13.1	37467
1jwqA	179	23.30	c.56.5.6	90921
1g6eA	87	23.48	b.11.1.6	60317
1c8cA	64	25.06	b.34.13.1	59084
2fvgA	340	26.06	b.49.3.1,c.56.5.4	134201,134202
1bnzA	64	26.59	b.34.13.1	37468
2r7dA	469	29.88		
2qh7A	76	32.90		
1zcbA	362	35.02	a.66.1.1,c.37.1.8	124901,124902
2yx0A	342	36.09		
1ko9A	345	38.67	a.96.1.3,d.129.1.2	68717,68718
2omkA	231	44.97		
1xyiA	66	46.53		
1bf4A	63	48.54	b.34.13.1	37461
2cyeA	133	49.33	d.38.1.1	131021
1xo0A	324	49.65	a.60.9.1,d.163.1.1	115674,115675
1a0p	290	53.68		
2cx5A	158	54.39		
1f2tA	149	56.67	c.37.1.12	32373
2nwbA	400	60.41		
2od0A	105	61.81		
1yfnA	118	63.15	b.136.1.1	123080
2j0aA	280	64.11		
1ebdA	455	66.53	c.3.1.5,c.3.1.5,d.87.1.1	30577,30578,40210
2pl9D	20	66.88		
1jnrA	643	67.44	a.7.3.1,c.3.1.4,d.168.1.1	66966,66967,66968
1m1hA	248	67.67	b.114.1.1,d.58.42.1	78415,78416
1reqA	727	68.40	c.1.19.1,c.23.6.1	29620,31247
2j01V	101	68.93		
1t8qA	336	70.90	c.1.18.3	106669
2pltA	98	72.79	b.6.1.1	22862
2qe7H	135	72.90		
1v47A	349	76.10	b.122.1.3,c.26.1.5	100292,100293
1xsjA	778	76.94	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	115951,115952,115953,115954
1i52A	236	77.87	c.68.1.13	61767
1oroA	213	78.03	c.61.1.1	34093
1yllA	200	79.39	b.82.1.17	123653
1vgwA	231	79.87	c.68.1.13	100612
2govA	195	80.38	d.60.1.4	135447
1uwdA	103	82.42	d.52.8.2	113447
1bbxC	63	84.51	b.34.13.1	37465
1q3iA	214	85.81	d.220.1.1	104524
1a04A	215	86.28	a.4.6.2,c.23.1.1	16234,31089
1jhdA	396	86.28	b.122.1.3,c.26.1.5	66712,66713
1b9wA	89	88.83	g.3.11.4,g.3.11.4	44334,44335
1zynA	202	89.01	c.47.1.2,c.47.1.2	125838,125839
2cohA	202	89.17	a.4.5.4,b.82.3.2	130677,130678