# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	3.44e-13		
1g6eA	87	4.542	b.11.1.6	60317
2esnA	310	6.845	a.4.5.37,c.94.1.1	132333,132334
2yzsA	315	7.909		
1c8cA	64	9.865	b.34.13.1	59084
1azpA	66	12.57	b.34.13.1	37467
2nwbA	400	16.28		
1swxA	209	18.03	a.224.1.1	106075
2qe7H	135	18.18		
2e5yA	133	19.06		
1bnzA	64	22.73	b.34.13.1	37468
2uubP	88	26.32	d.27.1.1	139947
1tfjA	219	26.94		
1bbxC	63	27.14	b.34.13.1	37465
1uwdA	103	27.75	d.52.8.2	113447
1zcbA	362	28.09	a.66.1.1,c.37.1.8	124901,124902
1bf4A	63	28.35	b.34.13.1	37461
1zeeA	403	30.39	a.266.1.2	124981
1xo0A	324	32.76	a.60.9.1,d.163.1.1	115674,115675
1u94A	356	34.67	c.37.1.11,d.48.1.1	107743,107744
1yllA	200	36.30	b.82.1.17	123653
2vqeP	88	39.50		
1jwqA	179	49.95	c.56.5.6	90921
1a0p	290	55.52		
2b3yA	888	55.78	c.8.2.1,c.83.1.1	127803,127804
2j4bA	138	58.41		
1qh0A	295	64.87	b.43.4.2,c.25.1.1	68891,68892
1lddA	74	68.76	a.4.5.34	73841
1e5kA	201	69.81	c.68.1.8	34578
1dfuP	94	69.93	b.53.1.1	26936
1f32A	149	71.95	d.62.1.1	39539
1y0mA	61	73.72		
1k82A	268	74.05	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
1cbfA	285	75.31	c.90.1.1	35587
1wpgA	994	75.58	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
2cohA	202	77.63	a.4.5.4,b.82.3.2	130677,130678
1j7iA	264	81.00	d.144.1.6	62694
2j01V	101	81.19		
1dzfA	215	82.47	c.52.3.1,d.78.1.1	33344,39753
1xovA	326	84.53	b.34.11.4,c.56.5.6	122206,122207
1xyiA	66	87.12		
1b7bA	310	88.57	c.73.1.1	34963