# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bs1A 103 2.44e-12 1k82A 268 3.508 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 2yzsA 315 4.443 1azpA 66 4.790 b.34.13.1 37467 1bnzA 64 6.461 b.34.13.1 37468 1c8cA 64 7.116 b.34.13.1 59084 1r2zA 274 7.655 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 2esnA 310 8.354 a.4.5.37,c.94.1.1 132333,132334 1l1zA 274 10.02 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1xyiA 66 11.35 1bf4A 63 12.84 b.34.13.1 37461 1lwyA 324 14.15 a.96.1.3,d.129.1.2 78285,78286 2in5A 207 14.47 1zcbA 362 17.18 a.66.1.1,c.37.1.8 124901,124902 2gf3A 389 18.20 c.3.1.2,d.16.1.3 135070,135071 2e5yA 133 20.48 1bbxC 63 21.78 b.34.13.1 37465 1f2tA 149 22.75 c.37.1.12 32373 1wpgA 994 22.97 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 114806,114807,114808,114809 2omkA 231 23.70 1l9cA 389 26.99 c.3.1.2,d.16.1.3 77815,77816 1ko9A 345 29.07 a.96.1.3,d.129.1.2 68717,68718 1sg5A 86 30.42 b.137.1.2 118960 2qh7A 76 30.85 1xo0A 324 32.39 a.60.9.1,d.163.1.1 115674,115675 2cx5A 158 32.75 2vacA 134 34.73 2q35A 243 44.36 1ryiA 382 45.73 c.3.1.2,d.16.1.3 118813,118814 1q3iA 214 45.98 d.220.1.1 104524 1ebdA 455 46.21 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 1uwdA 103 47.14 d.52.8.2 113447 1b9wA 89 50.37 g.3.11.4,g.3.11.4 44334,44335 1yllA 200 52.82 b.82.1.17 123653 1b37B 472 53.81 c.3.1.2,d.16.1.5 30390,37954 1ee8A 266 54.01 a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 2od0A 105 55.09 2olnA 397 55.31 1dfuP 94 56.81 b.53.1.1 26936 1el5A 389 61.30 c.3.1.2,d.16.1.3 30369,37937 1m1hA 248 61.65 b.114.1.1,d.58.42.1 78415,78416 2j01V 101 62.60 1cuk 203 62.71 2j5gA 263 63.69 1ebmA 317 63.69 a.96.1.3,d.129.1.2 18751,41300 1ng4A 390 65.01 c.3.1.2,d.16.1.3 85666,85667 2pltA 98 67.54 b.6.1.1 22862 1a0p 290 68.18 1xd5A 112 70.57 b.78.1.1 115155 1pjjA 271 72.55 a.156.1.2,b.113.1.1,g.39.1.8 104164,104165,104166 2qe7H 135 74.73 1oqkA 97 75.30 b.137.1.1 93419 2qqrA 118 76.62 1o8uA 257 81.04 c.14.1.3 81194 1aqt 138 84.61 1lla 628 85.31 2jaeA 489 87.01 2h3bA 494 87.88 1vioA 243 88.27 d.265.1.3,d.66.1.5 100762,100763 2q18X 293 88.43 1dynA 125 89.16 b.55.1.1 26955