# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bs1A 103 6.46e-15 2e5vA 472 1.381 1yspA 181 2.187 2yzsA 315 5.303 3c96A 415 5.314 1bf4A 63 5.669 b.34.13.1 37461 1zcbA 362 6.195 a.66.1.1,c.37.1.8 124901,124902 1agjA 242 7.153 b.47.1.1 25827 1q3iA 214 8.877 d.220.1.1 104524 1vfsA 386 9.848 b.49.2.2,c.1.6.1 108584,108585 2qneA 495 9.912 1lgyA 269 10.39 c.69.1.17 34758 2gruA 368 12.21 1vioA 243 12.60 d.265.1.3,d.66.1.5 100762,100763 2q3uA 383 12.93 d.126.1.6 139809 2omkA 231 13.63 1go2A 304 15.26 b.43.4.2,c.25.1.1 76243,76244 1jhdA 396 15.37 b.122.1.3,c.26.1.5 66712,66713 1b2rA 304 17.24 b.43.4.2,c.25.1.1 25648,31538 1v47A 349 18.17 b.122.1.3,c.26.1.5 100292,100293 1ecxA 384 18.26 c.67.1.3 34431 1ogiA 303 19.03 b.43.4.2,c.25.1.1 92914,92915 1u08A 386 19.39 c.67.1.1 107543 1y0yA 353 20.37 b.49.3.1,c.56.5.4 122514,122515 1tk1A 260 21.77 d.248.1.1 107066 2d73A 738 22.83 2q91A 101 24.33 2glfA 450 24.86 2icsA 379 25.37 b.92.1.8,c.1.9.14 137241,137242 1h8mA 140 25.87 d.110.4.1 60782 2dynA 122 26.62 b.55.1.1 26957 1f2tA 149 28.10 c.37.1.12 32373 2h3bA 494 28.64 1c8cA 64 28.66 b.34.13.1 59084 1j7iA 264 29.65 d.144.1.6 62694 2aeeA 211 32.02 c.61.1.1 126620 2bhmA 164 32.62 2pltA 98 32.98 b.6.1.1 22862 1rwzA 245 33.37 d.131.1.2,d.131.1.2 98005,98006 3bt3A 148 33.60 1sjiA 350 33.98 2qzbA 166 34.93 2vacA 134 35.61 1azpA 66 36.08 b.34.13.1 37467 1amx 180 36.49 1zkcA 197 38.24 b.62.1.1 125182 1xo0A 324 38.27 a.60.9.1,d.163.1.1 115674,115675 1ky9A 448 39.46 b.36.1.4,b.47.1.1 73198,73199 1kdjA 102 39.50 b.6.1.1 22864 3bpkA 206 40.26 2r7dA 469 41.51 2gj2A 85 42.34 1bnzA 64 46.47 b.34.13.1 37468 1zu0A 529 46.70 2q2gA 180 47.27 2ihtA 573 49.14 2gtrA 261 50.81 1xyiA 66 51.03 2fp4B 395 54.95 c.23.4.1,d.142.1.4 133897,133898 1jwqA 179 55.57 c.56.5.6 90921 1fecA 490 55.68 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2gdrA 202 55.95 2hr0A 645 56.38 1auaA 296 56.45 a.5.3.1,c.13.1.1 16290,30882 2d9zA 129 58.00 2pyxA 526 60.63 2qh7A 76 60.73 1yfqA 342 60.97 b.69.4.2 116680 2p3rA 510 62.30 c.55.1.4,c.55.1.4 139471,139472 1xovA 326 63.15 b.34.11.4,c.56.5.6 122206,122207 1t3bA 211 64.76 c.47.1.9,d.17.3.1 106341,106342 1r13A 148 64.94 d.169.1.1,h.1.1.1 96782,96783 2oryA 346 65.20 1czaN 917 65.82 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1ztuA 341 66.15 2op6A 152 67.07 1ao0A 459 67.33 c.61.1.1,d.153.1.1 34049,41816 2heuA 401 67.75 2qf3A 243 67.98 2iw0A 254 68.34 c.6.2.3 137737 1an8 208 68.53 1euwA 152 69.53 b.85.4.1 28349 1plq 258 70.23 1topA 162 71.80 a.39.1.5 17223 1tib 269 72.22 2fvgA 340 72.66 b.49.3.1,c.56.5.4 134201,134202 2bmwA 304 73.90 b.43.4.2,c.25.1.1 128815,128816 1jnrA 643 74.30 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 2i1aA 148 75.31 2od0A 105 76.25 2a2nA 176 77.04 b.62.1.1 126041 1sfcD 87 77.31 h.1.15.1 45646 1p35A 299 78.77 b.28.1.1 23925 2dkaA 544 79.18 2cx5A 158 80.62 1eg5A 384 80.71 c.67.1.3 34429 1llaA 628 81.91 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1wnyA 186 82.07 1suuA 312 82.72 b.68.10.1 99006 1aorA 605 83.03 a.110.1.1,d.152.1.1 19042,41794 2o8nA 265 84.00 2oajA 902 84.28 1xipA 388 84.99 b.69.14.1 115360 2ok8A 316 85.05 2vluA 122 85.22 1iyeA 309 86.43 e.17.1.1 83786 1t0tV 248 88.21 d.58.4.10 106229 3bfnA 379 88.36 1oqkA 97 88.84 b.137.1.1 93419 2esnA 310 89.75 a.4.5.37,c.94.1.1 132333,132334