# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	3.29e-12		
1k82A	268	5.005	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
1lwyA	324	7.024	a.96.1.3,d.129.1.2	78285,78286
1r2zA	274	10.48	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
2yzsA	315	10.78		
2esnA	310	10.81	a.4.5.37,c.94.1.1	132333,132334
1l1zA	274	14.69	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
1azpA	66	15.20	b.34.13.1	37467
1f2tA	149	17.56	c.37.1.12	32373
1bnzA	64	18.69	b.34.13.1	37468
2qh7A	76	19.76		
1zcbA	362	24.23	a.66.1.1,c.37.1.8	124901,124902
1c8cA	64	25.36	b.34.13.1	59084
2vacA	134	26.00		
1ko9A	345	26.33	a.96.1.3,d.129.1.2	68717,68718
2omkA	231	32.87		
1xyiA	66	34.63		
1xo0A	324	39.53	a.60.9.1,d.163.1.1	115674,115675
1bf4A	63	40.38	b.34.13.1	37461
1bbxC	63	46.20	b.34.13.1	37465
2pltA	98	48.47	b.6.1.1	22862
1sf9A	128	48.78	b.34.15.1	98831
1wpgA	994	51.18	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
1zq9A	285	53.65	c.66.1.24	125505
1b9wA	89	55.33	g.3.11.4,g.3.11.4	44334,44335
1a0p	290	55.85		
1dynA	125	58.35	b.55.1.1	26955
2r7dA	469	59.50		
1dfuP	94	63.48	b.53.1.1	26936
1l4aD	87	63.74	h.1.15.1	73562
2h3bA	494	64.60		
2b3yA	888	65.86	c.8.2.1,c.83.1.1	127803,127804
2q18X	293	66.70		
1q3iA	214	73.12	d.220.1.1	104524
1pm6A	72	73.13	a.6.1.7	94894
2gf3A	389	73.89	c.3.1.2,d.16.1.3	135070,135071
1ebmA	317	74.81	a.96.1.3,d.129.1.2	18751,41300
1oqkA	97	75.57	b.137.1.1	93419
1oroA	213	76.08	c.61.1.1	34093
1t8qA	336	76.43	c.1.18.3	106669
2qqrA	118	79.36		
2d9zA	129	79.52		
2oizD	135	79.56		
2cx5A	158	80.94		
1g6eA	87	81.60	b.11.1.6	60317
1uwdA	103	82.02	d.52.8.2	113447
2etxA	209	82.99		
1cczA	171	83.14	b.1.1.1,b.1.1.3	19758,21683
2fvgA	340	87.54	b.49.3.1,c.56.5.4	134201,134202
1m1hA	248	88.98	b.114.1.1,d.58.42.1	78415,78416
1lla	628	89.61