# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	2.90e-13		
1zcbA	362	6.283	a.66.1.1,c.37.1.8	124901,124902
2esnA	310	7.102	a.4.5.37,c.94.1.1	132333,132334
1lwyA	324	7.490	a.96.1.3,d.129.1.2	78285,78286
1k82A	268	11.94	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
2vacA	134	15.46		
1azpA	66	19.22	b.34.13.1	37467
1ko9A	345	23.55	a.96.1.3,d.129.1.2	68717,68718
1g6eA	87	25.44	b.11.1.6	60317
1jwqA	179	27.56	c.56.5.6	90921
1bnzA	64	27.77	b.34.13.1	37468
1c8cA	64	29.13	b.34.13.1	59084
1yfnA	118	29.79	b.136.1.1	123080
1f2tA	149	30.37	c.37.1.12	32373
1r2zA	274	32.07	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
2yzsA	315	38.30		
1l1zA	274	40.98	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
3b7nA	320	47.98		
1oroA	213	50.95	c.61.1.1	34093
2d9zA	129	51.88		
1tk1A	260	54.01	d.248.1.1	107066
1xyiA	66	54.81		
2omkA	231	55.21		
3bvrA	383	56.86		
3c25A	383	56.86		
2qe7H	135	58.03		
2qh7A	76	59.11		
1oqkA	97	59.83	b.137.1.1	93419
2j0aA	280	61.53		
1m1hA	248	62.74	b.114.1.1,d.58.42.1	78415,78416
1bf4A	63	62.90	b.34.13.1	37461
2oizD	135	64.00		
1bbxC	63	65.20	b.34.13.1	37465
1dpeA	507	66.42	c.94.1.1	35799
1a0p	290	66.94		
1jnrA	643	68.20	a.7.3.1,c.3.1.4,d.168.1.1	66966,66967,66968
2pltA	98	68.52	b.6.1.1	22862
2od0A	105	74.72		
1lla	628	79.32		
1l4aD	87	79.65	h.1.15.1	73562
2cx5A	158	83.02		
1dynA	125	83.66	b.55.1.1	26955
1uwdA	103	85.46	d.52.8.2	113447
2qqrA	118	85.53		
2j01V	101	88.05