# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	3.53e-12		
2esnA	310	6.574	a.4.5.37,c.94.1.1	132333,132334
1lwyA	324	11.06	a.96.1.3,d.129.1.2	78285,78286
1zcbA	362	13.14	a.66.1.1,c.37.1.8	124901,124902
2vacA	134	16.26		
2yzsA	315	16.64		
1ko9A	345	18.88	a.96.1.3,d.129.1.2	68717,68718
1yfnA	118	22.47	b.136.1.1	123080
1azpA	66	25.90	b.34.13.1	37467
1k82A	268	28.01	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
1c8cA	64	28.70	b.34.13.1	59084
1bnzA	64	33.52	b.34.13.1	37468
2qe7H	135	43.17		
2cohA	202	44.21	a.4.5.4,b.82.3.2	130677,130678
1ebmA	317	45.59	a.96.1.3,d.129.1.2	18751,41300
2nwbA	400	47.01		
1v97A	1332	49.18	a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3	108436,108437,108438,108439,108440,108441
1mo7A	213	53.85	d.220.1.1	85028
1b9wA	89	54.68	g.3.11.4,g.3.11.4	44334,44335
1m1hA	248	57.49	b.114.1.1,d.58.42.1	78415,78416
1r2zA	274	60.06	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1lla	628	60.85		
1bf4A	63	62.57	b.34.13.1	37461
2j0aA	280	63.71		
1h8mA	140	64.87	d.110.4.1	60782
1ox8A	107	65.05	b.136.1.1	93671
1t8qA	336	65.08	c.1.18.3	106669
2fvgA	340	67.79	b.49.3.1,c.56.5.4	134201,134202
1jwqA	179	68.38	c.56.5.6	90921
1dpeA	507	70.40	c.94.1.1	35799
2e5yA	133	71.90		
1dynA	125	74.70	b.55.1.1	26955
1l1zA	274	77.11	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
1q3iA	214	77.35	d.220.1.1	104524
2qh7A	76	77.66		
2dynA	122	78.26	b.55.1.1	26957
1ou8A	111	80.06	b.136.1.1	93543
1xyiA	66	80.40		
2d9zA	129	81.96		
1ebdA	455	83.77	c.3.1.5,c.3.1.5,d.87.1.1	30577,30578,40210
1a0p	290	86.71