# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	2.02e-12		
2esnA	310	3.754	a.4.5.37,c.94.1.1	132333,132334
1azpA	66	8.837	b.34.13.1	37467
2yzsA	315	9.120		
1bnzA	64	11.02	b.34.13.1	37468
1c8cA	64	12.99	b.34.13.1	59084
1k82A	268	14.19	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
1lwyA	324	14.70	a.96.1.3,d.129.1.2	78285,78286
2vacA	134	15.99		
1xyiA	66	16.06		
1bf4A	63	18.17	b.34.13.1	37461
1bbxC	63	21.98	b.34.13.1	37465
1ko9A	345	22.12	a.96.1.3,d.129.1.2	68717,68718
1r2zA	274	22.31	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1zcbA	362	24.61	a.66.1.1,c.37.1.8	124901,124902
1jwqA	179	26.14	c.56.5.6	90921
2qe7H	135	26.21		
1g6eA	87	28.86	b.11.1.6	60317
1yfnA	118	29.14	b.136.1.1	123080
2j0aA	280	32.79		
1a0p	290	33.40		
1l1zA	274	35.72	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
2fvgA	340	44.11	b.49.3.1,c.56.5.4	134201,134202
2qh7A	76	45.30		
2nwbA	400	47.95		
1wpgA	994	49.66	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
1o22A	170	51.53	d.238.1.1	86557
1zvtA	256	51.77		
1m1hA	248	51.84	b.114.1.1,d.58.42.1	78415,78416
1ebmA	317	55.07	a.96.1.3,d.129.1.2	18751,41300
1q3iA	214	57.55	d.220.1.1	104524
1f2tA	149	58.73	c.37.1.12	32373
2pltA	98	59.34	b.6.1.1	22862
2cyeA	133	59.42	d.38.1.1	131021
1xo0A	324	62.84	a.60.9.1,d.163.1.1	115674,115675
1wtaA	275	64.79		
1mo7A	213	65.63	d.220.1.1	85028
2gf3A	389	66.11	c.3.1.2,d.16.1.3	135070,135071
1jnrA	643	66.63	a.7.3.1,c.3.1.4,d.168.1.1	66966,66967,66968
1a0pA	290	67.83	a.60.9.1,d.163.1.1	18105,42165
2e5yA	133	69.79		
3b7nA	320	70.60		
1dynA	125	73.10	b.55.1.1	26955
2omkA	231	73.16		
3b79A	129	73.37		
1dpeA	507	73.91	c.94.1.1	35799
2qqrA	118	74.26		
1tk1A	260	76.47	d.248.1.1	107066
2cx5A	158	76.70		
1v97A	1332	76.99	a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3	108436,108437,108438,108439,108440,108441
1yllA	200	77.55	b.82.1.17	123653
1lla	628	83.98		
1l4aD	87	84.10	h.1.15.1	73562
1t8qA	336	85.51	c.1.18.3	106669
1ou8A	111	85.76	b.136.1.1	93543