# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	1.10e-10		
1swxA	209	15.00	a.224.1.1	106075
2govA	195	18.74	d.60.1.4	135447
2nwbA	400	24.65		
2esnA	310	26.52	a.4.5.37,c.94.1.1	132333,132334
2yzsA	315	26.87		
2yv4A	105	27.54		
1cbfA	285	27.73	c.90.1.1	35587
1g6eA	87	29.86	b.11.1.6	60317
1yloA	348	32.21	b.49.3.1,c.56.5.4	123659,123660
1hyvA	166	35.61	c.55.3.2	61424
1pvgA	418	38.74	d.14.1.3,d.122.1.2	95161,95162
1oqkA	97	40.44	b.137.1.1	93419
2qqrA	118	41.83		
2olnA	397	43.15		
1y0mA	61	43.19		
1zeeA	403	47.53	a.266.1.2	124981
1ug1A	92	49.82	b.34.2.1	99360
1znbA	232	51.01	d.157.1.1	42039
2vacA	134	54.81		
1fnc	314	60.02		
2cx5A	158	62.83		
1tfjA	219	65.28		
1ekfA	365	66.02	e.17.1.1	59445
2gp4A	628	67.50	c.8.2.2,d.334.1.1	135448,135449
1yllA	200	70.98	b.82.1.17	123653
2gf3A	389	71.76	c.3.1.2,d.16.1.3	135070,135071
2avnA	260	72.41	c.66.1.41	127380
1dynA	125	72.76	b.55.1.1	26955
2djlA	314	73.05		
1fcdA	401	73.40	c.3.1.5,c.3.1.5,d.87.1.1	30593,30594,40218
1ywpA	64	74.08		
1e5kA	201	75.50	c.68.1.8	34578
1ko9A	345	76.04	a.96.1.3,d.129.1.2	68717,68718
2qh7A	76	77.74		
1ryp2	233	78.68		
1ckaA	57	84.54	b.34.2.1	24459
1xg8A	111	85.58	c.47.1.17	115283
2j13A	247	85.80	c.6.2.3	137934
1xp3A	307	87.93	c.1.15.1	122210
1j7iA	264	89.48	d.144.1.6	62694
1l9cA	389	89.56	c.3.1.2,d.16.1.3	77815,77816