# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	6.91e-11		
1oroA	213	13.62	c.61.1.1	34093
2egtA	132	22.06		
1e5kA	201	25.18	c.68.1.8	34578
2esnA	310	29.79	a.4.5.37,c.94.1.1	132333,132334
1vc4A	254	33.34	c.1.2.4	100557
1g6eA	87	34.94	b.11.1.6	60317
1wtaA	275	39.33		
2j01V	101	42.87		
2govA	195	44.34	d.60.1.4	135447
2c3zA	222	47.19		
2vguA	407	47.83		
2yx0A	342	47.84		
2cx5A	158	51.48		
1qh0A	295	52.76	b.43.4.2,c.25.1.1	68891,68892
1azpA	66	54.30	b.34.13.1	37467
1dynA	125	55.63	b.55.1.1	26955
1yllA	200	57.04	b.82.1.17	123653
2omkA	231	57.53		
2nwbA	400	58.58		
1hyvA	166	61.15	c.55.3.2	61424
2yzsA	315	64.50		
2dynA	122	65.26	b.55.1.1	26957
1c8cA	64	68.47	b.34.13.1	59084
1xo0A	324	73.32	a.60.9.1,d.163.1.1	115674,115675
1i52A	236	74.91	c.68.1.13	61767
1g1cA	99	75.57	b.1.1.4	65078
1u2hA	99	75.90		
1swxA	209	78.55	a.224.1.1	106075
1uwdA	103	81.00	d.52.8.2	113447
1bnzA	64	81.43	b.34.13.1	37468
3b7nA	320	82.55		
1fr9A	194	85.84	c.68.1.8	34579
1lplA	95	86.63	b.34.10.1	74173