# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bs1A 103 3.86e-09 1bf4A 63 1.723 b.34.13.1 37461 1c8cA 64 2.017 b.34.13.1 59084 1azpA 66 2.719 b.34.13.1 37467 2d4qA 257 3.849 2jqoA 108 4.242 1h9mA 145 5.168 b.40.6.2,b.40.6.2 60833,60834 2f1lA 187 5.849 b.41.1.4,b.43.3.4 132780,132781 1xyiA 66 6.193 1bnzA 64 6.856 b.34.13.1 37468 1s21A 206 12.63 d.166.1.4 105222 1g6eA 87 15.14 b.11.1.6 60317 1r9fA 136 16.72 d.255.1.1 97257 2j5zA 221 17.69 2ahrA 259 19.18 a.100.1.10,c.2.1.6 126775,126776 1ywuA 149 21.10 b.45.2.1 124164 1b3aA 67 21.36 d.9.1.1 37410 1j8iA 93 22.98 d.9.1.1 66438 1e69B 322 23.20 c.37.1.12 32377 1f9rA 70 25.31 d.9.1.1 90484 2nptA 106 25.57 d.15.2.2 138448 1tw0A 157 26.36 d.129.3.1 119364 1plfA 72 29.60 d.9.1.1 37373 2qqrA 118 31.31 1cm9A 74 33.82 d.9.1.1 37405 2ra4A 76 34.33 1griA 217 34.57 b.34.2.1,b.34.2.1,d.93.1.1 24531,24532,40473 1rsgA 516 34.65 2hc8A 113 35.90 2q8rE 66 35.95 1h9jA 145 37.69 b.40.6.2,b.40.6.2 60829,60830 2aefA 234 38.36 1udmA 149 38.91 d.109.1.2 107780 1aogA 485 39.65 c.3.1.5,c.3.1.5,d.87.1.1 30517,30518,40190 1faoA 126 39.72 b.55.1.1 26974 1wmhB 86 39.80 d.15.2.2 114745 2jhmF 218 41.10 2e29A 92 41.62 1iseA 185 41.81 d.67.3.1 90691 1mi1A 414 42.81 a.169.1.1,b.55.1.6 79137,79138 2cyeA 133 42.98 d.38.1.1 131021 1vkjA 285 43.38 c.37.1.5 108666 1h4rA 314 44.31 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 2v14A 134 45.42 1eqtA 68 45.51 d.9.1.1 37412 1nr4A 71 45.90 d.9.1.1 92077 1lci 550 46.40 2a19A 175 47.50 2if6A 186 48.16 1upqA 123 48.64 b.55.1.1 113392 1wmhA 89 49.19 d.15.2.2 114744 1xxaA 78 49.63 d.74.2.1 39700 1kexA 155 49.98 b.18.1.2 77350 1ef1A 294 50.81 a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 1wpgA 994 51.36 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 114806,114807,114808,114809 2e5yA 133 51.41 1f2lA 76 54.46 d.9.1.1 37436 1esrA 76 54.84 d.9.1.1 37427 1xdfA 157 55.58 d.129.3.1 121868 2gclA 261 55.83 b.55.1.10 134991 1t77A 414 56.77 a.169.1.1,b.55.1.6 112290,112291 1ng2A 193 56.79 b.34.2.1,b.34.2.1 85660,85661 1eudB 396 58.10 c.23.4.1,d.142.1.4 31150,41571 2qggA 182 58.12 2e0qA 104 58.85 1b2tA 77 59.61 d.9.1.1 37440 1t3yA 141 60.34 d.109.1.2 119141 1eazA 125 60.74 b.55.1.1 70113 2in5A 207 61.25 2he7A 283 61.27 2cs2A 134 61.46 2bbdA 350 62.12 1prtA 234 63.95 d.166.1.1 42253 2fp4B 395 64.71 c.23.4.1,d.142.1.4 133897,133898 2fibA 269 65.90 d.171.1.1 42457 2qimA 158 66.37 1iz6A 138 66.45 b.34.5.2,b.40.4.5 76976,76977 3cm1A 139 67.11 1v5pA 126 67.37 b.55.1.1 108382 1txdA 385 67.41 a.87.1.1,b.55.1.1 107422,107423 1fecA 490 67.53 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 3b77A 193 67.64 1uekA 275 68.42 d.14.1.5,d.58.26.5 88483,88484 1vfqA 143 68.95 d.109.1.2 120054 1zxtA 76 71.79 2zbcA 83 77.09 1erv 105 77.83 1napA 70 80.99 d.9.1.1 37445 2pw9A 268 81.26 2ns5A 85 82.27 1ptoA 244 83.55 d.166.1.1 42257 1wj6A 101 84.69 d.15.2.2 114693 2ipxA 233 85.13 1zrhA 274 86.09 2qh5A 308 86.88 1xo0A 324 87.84 a.60.9.1,d.163.1.1 115674,115675 2oodA 475 88.19 2gj2A 85 88.26 2d39A 237 89.29