# List of top-scoring protein chains for T0415.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	4.81e-05		
2fb2A	340	28.14		
1tv8A	340	28.42	c.1.28.3	107352
2z1gA	155	36.95		
1k82A	268	38.35	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
2z1jA	155	43.99		
2z1iA	155	44.19		
2dg6A	222	54.57		
2i2cA	272	55.53		
1v3aA	173	56.55	c.45.1.1	113499
2q5fA	272	58.24		
1r6hA	172	59.02	c.45.1.1	97150
2i2fA	272	63.74		
1pr9A	244	64.17	c.2.1.2	95060
1b77A	228	64.97	d.131.1.2,d.131.1.2	41362,41363
2uy9A	385	65.66		
2v09A	385	66.20		
1mjgM	729	66.52	e.26.1.3	79204
2uy8A	385	67.14		
1j58A	385	67.45	b.82.1.2	71531
2uybA	385	67.53		
2meaA	130	67.74	d.2.1.2	36572
1oaoC	729	68.24	e.26.1.3	86746
1n8fA	350	71.12	c.1.10.4	85397
1gg1A	350	72.44	c.1.10.4	29187
2dpyA	438	72.66		
1tfsA	60	77.09	g.7.1.1	44423
1y10A	407	77.58		
2p57A	144	86.92		
2b9wA	424	88.59		
2auwA	170	89.62	a.35.1.10,d.331.1.1	127339,127340