# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	1.58e-10		
1k82A	268	5.969	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
2ywmA	229	15.59		
2auwA	170	16.77	a.35.1.10,d.331.1.1	127339,127340
2j8sA	1055	17.68		
2yzsA	315	20.96		
2gjgA	248	24.29		
1l1eA	287	25.86	c.66.1.18	73454
1gycA	499	26.51	b.6.1.3,b.6.1.3,b.6.1.3	70748,70749,70750
1nkqA	259	27.22	d.177.1.1	103862
2aytA	237	28.48		
1sg5A	86	29.55	b.137.1.2	118960
1g61A	228	31.23	d.126.1.1	41126
1v10A	521	32.47	b.6.1.3,b.6.1.3,b.6.1.3	108224,108225,108226
1hfuA	503	34.72	b.6.1.3,b.6.1.3,b.6.1.3	65827,65828,65829
1y8cA	246	35.11	c.66.1.43	116563
2guiA	194	44.97	c.55.3.5	135737
1tdzA	272	45.90	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1gg3A	279	46.43	a.11.2.1,b.55.1.5,d.15.1.4	16372,27007,37615
1jhdA	396	47.56	b.122.1.3,c.26.1.5	66712,66713
2e5yA	133	50.36		
2h5uA	499	50.43		
1g6eA	87	50.45	b.11.1.6	60317
2vh1A	220	50.87		
1xyiA	66	51.80		
1hdhA	536	52.70	c.76.1.2	65805
1c8cA	64	53.27	b.34.13.1	59084
2rcvA	202	53.36		
2j01Z	206	55.63		
1a0pA	290	55.78	a.60.9.1,d.163.1.1	18105,42165
1kkhA	317	56.59	d.14.1.5,d.58.26.3	72645,72646
2ih8A	559	64.37	b.6.1.3,b.6.1.3,b.6.1.3	137407,137408,137409
2gifA	1057	64.52		
1yllA	200	65.19	b.82.1.17	123653
1tu3F	79	65.86	h.1.27.2	112644
1vr5A	547	66.80	c.94.1.1	120437
1r5lA	262	70.11	a.5.3.1,c.13.1.1	97099,97100
3c9qA	205	71.33		
2c5qA	240	73.79		
2qe7H	135	74.91		
2ebjA	192	76.42		
1dfuP	94	77.46	b.53.1.1	26936
1a0p	290	78.50		
1xffA	240	79.09	d.153.1.1	109580
1zynA	202	79.20	c.47.1.2,c.47.1.2	125838,125839
1v47A	349	86.96	b.122.1.3,c.26.1.5	100292,100293
2h0vA	338	88.05		
1eu3A	210	88.08	b.40.2.2,d.15.6.1	25206,37795
2eb4A	267	89.21		
2ywlA	180	89.77