# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	1.48e-09		
2j8sA	1055	14.52		
2auwA	170	17.36	a.35.1.10,d.331.1.1	127339,127340
1c8cA	64	21.09	b.34.13.1	59084
1k82A	268	23.20	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
3bxoA	239	29.96		
1gg3A	279	30.87	a.11.2.1,b.55.1.5,d.15.1.4	16372,27007,37615
1xyiA	66	33.56		
1dfuP	94	36.02	b.53.1.1	26936
2gifA	1057	36.16		
1yfnA	118	37.97	b.136.1.1	123080
1y8cA	246	38.86	c.66.1.43	116563
1g6eA	87	39.14	b.11.1.6	60317
1ou8A	111	42.00	b.136.1.1	93543
1g61A	228	42.40	d.126.1.1	41126
2yzsA	315	43.97		
3c9qA	205	45.27		
2gjgA	248	46.12		
1v10A	521	46.39	b.6.1.3,b.6.1.3,b.6.1.3	108224,108225,108226
1hfuA	503	49.20	b.6.1.3,b.6.1.3,b.6.1.3	65827,65828,65829
1gycA	499	54.61	b.6.1.3,b.6.1.3,b.6.1.3	70748,70749,70750
1nkqA	259	57.20	d.177.1.1	103862
2ywmA	229	58.89		
1vr5A	547	59.34	c.94.1.1	120437
1zcbA	362	66.30	a.66.1.1,c.37.1.8	124901,124902
1ywyA	74	66.52	b.55.2.1	124166
2qe7H	135	67.51		
3bijA	285	68.38		
2rcvA	202	68.55		
1kkhA	317	69.49	d.14.1.5,d.58.26.3	72645,72646
1tif	78	69.81		
2guiA	194	70.63	c.55.3.5	135737
1tifA	78	71.75	d.15.8.1	37836
2mbrA	340	75.05	d.145.1.2,d.146.1.1	41749,41762
2h5uA	499	75.77		
2bvfA	459	76.09		
1r5lA	262	77.25	a.5.3.1,c.13.1.1	97099,97100
2ih8A	559	80.65	b.6.1.3,b.6.1.3,b.6.1.3	137407,137408,137409
2vh1A	220	83.19		
1uxy	340	84.45		
2dm9A	198	86.01		
2olnA	397	86.94		
2v14A	134	87.08		
2aytA	237	87.54		
2ywlA	180	89.56		
2e5yA	133	89.79