# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bs1A 103 7.55e-16 1k82A 268 2.589 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 2yzsA 315 3.038 1g61A 228 6.063 d.126.1.1 41126 3b79A 129 7.514 3bxoA 239 7.928 2j8sA 1055 8.229 1ywyA 74 8.558 b.55.2.1 124166 1vetB 125 9.387 d.110.7.1 108554 2vh1A 220 10.04 1c8cA 64 10.32 b.34.13.1 59084 2ywlA 180 10.89 1yfnA 118 11.65 b.136.1.1 123080 2e5yA 133 11.77 1ou8A 111 12.75 b.136.1.1 93543 2ebjA 192 14.63 1gg3A 279 16.93 a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 1suuA 312 17.88 b.68.10.1 99006 1xyiA 66 17.95 2z2iA 191 18.13 2auwA 170 19.71 a.35.1.10,d.331.1.1 127339,127340 1ifqA 138 20.96 d.110.4.1 62350 2ih8A 559 22.19 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 2nutC 196 23.97 2evrA 246 26.86 b.34.11.3,d.3.1.16 132440,132441 2bvfA 459 27.32 1zi0A 307 27.41 2cvjA 180 31.65 1in4A 334 31.97 a.4.5.11,c.37.1.20 62597,62598 1gycA 499 32.03 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 1tdzA 272 32.65 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1ee8A 266 33.27 a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1hfuA 503 33.72 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1v10A 521 33.76 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 1y8cA 246 34.07 c.66.1.43 116563 1uxy 340 34.48 1lbaA 146 35.86 d.118.1.1 41062 2mbrA 340 36.14 d.145.1.2,d.146.1.1 41749,41762 2he7A 283 36.54 2ch4W 151 41.50 b.40.7.1 130451 1zr6A 503 43.36 1dfcA 493 43.45 b.42.5.1,b.42.5.1,b.42.5.1,b.42.5.1 25616,25617,25618,25619 1q3iA 214 43.51 d.220.1.1 104524 3c9qA 205 43.88 2gifA 1057 44.25 2h0vA 338 44.44 1g62A 224 44.71 d.126.1.1 41128 2j0aA 280 45.74 2bbhA 269 48.02 d.328.1.1 128266 1sg5A 86 48.39 b.137.1.2 118960 1tif 78 49.41 1tygB 87 51.47 d.15.3.2 107455 2h5uA 499 51.52 1dfuP 94 51.65 b.53.1.1 26936 1tifA 78 51.92 d.15.8.1 37836 1s7mA 174 52.39 b.144.1.1 98649 1k3xA 262 54.87 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1fs0E 138 55.30 a.2.10.1,b.93.1.1 59997,59998 1y6uA 70 56.34 1a12A 413 56.96 b.69.5.1 27663 2qe7H 135 59.15 2qdlA 165 59.31 2j01Z 206 61.32 1feuA 206 62.61 b.53.1.1 59801 1uxyA 340 62.89 d.145.1.2,d.146.1.1 41748,41761 1m6iA 493 63.65 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2yvyA 278 65.00 2jsxA 95 66.05 1hh1A 143 66.70 c.52.1.18 61036 1q7fA 286 66.90 b.68.9.1 96036 2v3aA 384 69.14 1xffA 240 69.30 d.153.1.1 109580 1a53 247 70.10 1i4nA 251 73.11 c.1.2.4 71114 1zk7A 467 76.55 1ynfA 458 76.88 d.126.1.7 123723 2aytA 237 77.93 2ijaA 295 79.59 1eu3A 210 84.13 b.40.2.2,d.15.6.1 25206,37795 2ywmA 229 84.35 2z1cA 75 84.68 2cduA 452 85.99 1jwqA 179 87.02 c.56.5.6 90921 2g3rA 123 87.67 b.34.9.1,b.34.9.1 134570,134571 2dl6A 83 88.52 2b9wA 424 89.88