# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	6.71e-11		
1k82A	268	3.361	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
2yzsA	315	13.40		
2vh1A	220	14.67		
1vetB	125	18.66	d.110.7.1	108554
1sg5A	86	23.53	b.137.1.2	118960
2ywlA	180	23.95		
1in4A	334	24.43	a.4.5.11,c.37.1.20	62597,62598
2auwA	170	28.39	a.35.1.10,d.331.1.1	127339,127340
1fdr	248	30.13		
2ywmA	229	30.77		
1c8cA	64	32.25	b.34.13.1	59084
2z2iA	191	32.82		
1r5lA	262	33.19	a.5.3.1,c.13.1.1	97099,97100
2nutC	196	34.66		
1y8cA	246	38.42	c.66.1.43	116563
1tdzA	272	39.97	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1ifqA	138	41.16	d.110.4.1	62350
2aeeA	211	42.94	c.61.1.1	126620
1qb7A	236	43.40	c.61.1.1	34087
2himA	358	44.00		
1zcbA	362	45.92	a.66.1.1,c.37.1.8	124901,124902
1xyiA	66	47.61		
1fdrA	248	48.89	b.43.4.2,c.25.1.1	25653,31543
1a53	247	51.09		
1azsC	388	51.65	a.66.1.1,c.37.1.8	18203,32086
2j8sA	1055	53.68		
2od0A	105	54.20		
2guiA	194	54.57	c.55.3.5	135737
1aua	296	57.59		
1a12A	413	61.61	b.69.5.1	27663
1ou8A	111	62.28	b.136.1.1	93543
1zynA	202	62.51	c.47.1.2,c.47.1.2	125838,125839
2h0vA	338	62.91		
3b79A	129	65.37		
1yfnA	118	65.67	b.136.1.1	123080
2cvjA	180	67.79		
1f9mA	112	67.80	c.47.1.1	32736
1g61A	228	75.31	d.126.1.1	41126
2aytA	237	78.59		
1nkqA	259	78.96	d.177.1.1	103862
2gjgA	248	79.09		
1jhdA	396	79.86	b.122.1.3,c.26.1.5	66712,66713
2e0qA	104	84.06		
2g6yA	217	85.51		
1ynfA	458	85.70	d.126.1.7	123723
2jsxA	95	86.28		
2cu6A	103	86.43	d.52.8.2	130803
1gg3A	279	86.90	a.11.2.1,b.55.1.5,d.15.1.4	16372,27007,37615
1yllA	200	87.55	b.82.1.17	123653
2bvfA	459	87.81		
1g6eA	87	87.97	b.11.1.6	60317
1auaA	296	88.85	a.5.3.1,c.13.1.1	16290,30882