# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	1.92e-10		
1k82A	268	6.851	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
2yzsA	315	24.33		
1y8cA	246	24.98	c.66.1.43	116563
1r5lA	262	25.72	a.5.3.1,c.13.1.1	97099,97100
2j8sA	1055	26.43		
2auwA	170	27.66	a.35.1.10,d.331.1.1	127339,127340
1fdr	248	29.35		
2ywlA	180	33.67		
2vh1A	220	34.63		
1vetB	125	35.09	d.110.7.1	108554
1zcbA	362	36.31	a.66.1.1,c.37.1.8	124901,124902
1in4A	334	37.67	a.4.5.11,c.37.1.20	62597,62598
2nutC	196	38.92		
1nkqA	259	39.09	d.177.1.1	103862
2himA	358	40.57		
2gjgA	248	42.82		
2z2iA	191	44.69		
1fdrA	248	46.81	b.43.4.2,c.25.1.1	25653,31543
1ifqA	138	48.07	d.110.4.1	62350
2aeeA	211	49.81	c.61.1.1	126620
1tdzA	272	51.70	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
2guiA	194	53.11	c.55.3.5	135737
2bvfA	459	54.03		
1ou8A	111	54.26	b.136.1.1	93543
1yfnA	118	55.09	b.136.1.1	123080
2ywmA	229	56.17		
1a53	247	56.56		
1jhdA	396	56.92	b.122.1.3,c.26.1.5	66712,66713
1qb7A	236	57.95	c.61.1.1	34087
3b79A	129	58.01		
1aua	296	63.18		
1zynA	202	63.91	c.47.1.2,c.47.1.2	125838,125839
1sg5A	86	65.05	b.137.1.2	118960
1v47A	349	69.69	b.122.1.3,c.26.1.5	100292,100293
1f9mA	112	70.06	c.47.1.1	32736
2od0A	105	70.11		
1g6eA	87	71.06	b.11.1.6	60317
2jsxA	95	72.30		
1azsC	388	75.69	a.66.1.1,c.37.1.8	18203,32086
1ynfA	458	85.38	d.126.1.7	123723
2r7dA	469	87.63		
1hdhA	536	88.00	c.76.1.2	65805
2eb4A	267	88.40		
2h0vA	338	89.21