# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	3.15e-10		
1k82A	268	4.869	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
2vh1A	220	19.60		
1r5lA	262	19.81	a.5.3.1,c.13.1.1	97099,97100
1y8cA	246	22.33	c.66.1.43	116563
2j8sA	1055	22.94		
1in4A	334	24.06	a.4.5.11,c.37.1.20	62597,62598
2yzsA	315	24.80		
1fdr	248	26.80		
2auwA	170	32.32	a.35.1.10,d.331.1.1	127339,127340
2ywlA	180	36.01		
1vetB	125	36.85	d.110.7.1	108554
1zcbA	362	37.86	a.66.1.1,c.37.1.8	124901,124902
1tdzA	272	38.98	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1fdrA	248	40.25	b.43.4.2,c.25.1.1	25653,31543
2aeeA	211	41.35	c.61.1.1	126620
2nutC	196	42.07		
2himA	358	43.58		
2gjgA	248	44.98		
2ywmA	229	46.80		
1aua	296	48.46		
1yfnA	118	50.32	b.136.1.1	123080
1ou8A	111	52.09	b.136.1.1	93543
2od0A	105	53.75		
2guiA	194	55.02	c.55.3.5	135737
1a53	247	55.84		
2z2iA	191	56.64		
1sg5A	86	59.10	b.137.1.2	118960
1f9mA	112	60.95	c.47.1.1	32736
1jhdA	396	62.98	b.122.1.3,c.26.1.5	66712,66713
1azsC	388	63.63	a.66.1.1,c.37.1.8	18203,32086
1ifqA	138	64.34	d.110.4.1	62350
2bvfA	459	66.62		
1qb7A	236	67.10	c.61.1.1	34087
3b79A	129	68.77		
1nkqA	259	73.37	d.177.1.1	103862
1auaA	296	73.44	a.5.3.1,c.13.1.1	16290,30882
1zynA	202	74.83	c.47.1.2,c.47.1.2	125838,125839
2jsxA	95	74.88		
1g6eA	87	78.60	b.11.1.6	60317
2j0aA	280	79.11		
2e0qA	104	83.50		
1ynfA	458	85.13	d.126.1.7	123723
1v47A	349	86.87	b.122.1.3,c.26.1.5	100292,100293
1hdhA	536	88.75	c.76.1.2	65805
1c8cA	64	88.98	b.34.13.1	59084