# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	1.86e-12		
1k82A	268	1.069	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
2yzsA	315	4.374		
2vh1A	220	11.19		
1sg5A	86	12.05	b.137.1.2	118960
1tdzA	272	16.00	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1g61A	228	16.95	d.126.1.1	41126
2auwA	170	17.29	a.35.1.10,d.331.1.1	127339,127340
1xyiA	66	17.50		
1c8cA	64	17.60	b.34.13.1	59084
1g62A	224	20.15	d.126.1.1	41128
2gjgA	248	26.48		
1a12A	413	26.91	b.69.5.1	27663
2ywlA	180	28.49		
2e5yA	133	29.61		
2nutC	196	31.78		
1vetB	125	34.34	d.110.7.1	108554
2j8sA	1055	34.80		
1ee8A	266	37.46	a.156.1.2,b.113.1.1,g.39.1.8	75823,75824,75825
2himA	358	37.73		
2ywmA	229	37.96		
1ifqA	138	43.68	d.110.4.1	62350
1k3xA	262	44.36	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
1ou8A	111	45.06	b.136.1.1	93543
1zcbA	362	45.27	a.66.1.1,c.37.1.8	124901,124902
1gg3A	279	46.30	a.11.2.1,b.55.1.5,d.15.1.4	16372,27007,37615
2q35A	243	48.44		
1yfnA	118	48.65	b.136.1.1	123080
2olnA	397	48.90		
2g6yA	217	49.91		
2h0vA	338	50.31		
2evrA	246	51.91	b.34.11.3,d.3.1.16	132440,132441
1mixA	206	52.84	a.11.2.1,b.55.1.5	79166,79167
1hdhA	536	53.23	c.76.1.2	65805
2guiA	194	53.53	c.55.3.5	135737
1r2zA	274	56.12	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1tifA	78	57.94	d.15.8.1	37836
1el5A	389	58.35	c.3.1.2,d.16.1.3	30369,37937
2v3aA	384	59.02		
1pcfA	66	59.93	d.18.1.1	38142
2q0lA	311	61.32		
2ebjA	192	62.64		
1w1hA	151	62.72	b.55.1.1	114076
2rcvA	202	63.02		
1yllA	200	64.45	b.82.1.17	123653
2j5gA	263	67.49		
1tif	78	67.61		
1r5lA	262	70.71	a.5.3.1,c.13.1.1	97099,97100
1d4tA	104	71.35	d.93.1.1	40537
1wpgA	994	73.75	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
1v74A	107	73.83	d.243.1.1	100442
1dfuP	94	76.41	b.53.1.1	26936
2cu6A	103	78.55	d.52.8.2	130803
1jtdB	273	80.72	b.69.5.2	67265
2yvyA	278	80.88		
1zk7A	467	81.62		
3b79A	129	84.00		
2cvjA	180	84.24		
2od0A	105	85.39		
8abp	306	88.53		
2qdlA	165	89.17