# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bs1A 103 2.27e-15 2aeeA 211 1.557 c.61.1.1 126620 2gjgA 248 2.410 1vf8A 377 5.155 c.1.8.5,d.26.3.1 120029,120030 2yzsA 315 6.203 2eh6A 375 6.298 1zcbA 362 8.345 a.66.1.1,c.37.1.8 124901,124902 2ywmA 229 9.135 2rebA 352 10.19 c.37.1.11,d.48.1.1 32282,38767 1s1mA 545 10.59 c.23.16.1,c.37.1.10 105201,105202 1yfqA 342 11.78 b.69.4.2 116680 1agjA 242 13.02 b.47.1.1 25827 1a12A 413 14.32 b.69.5.1 27663 1lvmA 229 14.34 b.47.1.3 78243 2pa7A 141 15.23 2qf3A 243 15.70 2ih8A 559 18.88 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 1l1qA 186 20.43 c.61.1.1 77653 1nkqA 259 20.53 d.177.1.1 103862 1jhdA 396 21.28 b.122.1.3,c.26.1.5 66712,66713 1sqjA 789 21.75 b.69.13.1,b.69.13.1 105918,105919 1yp2A 451 22.31 b.81.1.4,c.68.1.6 123798,123799 1k77A 260 23.01 c.1.15.5 72096 2hldD 478 23.25 1q3iA 214 23.32 d.220.1.1 104524 1v47A 349 23.46 b.122.1.3,c.26.1.5 100292,100293 1iyeA 309 25.31 e.17.1.1 83786 1pyaB 228 25.31 1zk7A 467 25.40 1yspA 181 25.85 1eg5A 384 26.17 c.67.1.3 34429 1hdhA 536 26.35 c.76.1.2 65805 2bbhA 269 27.04 d.328.1.1 128266 1gg3A 279 29.10 a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 2pnwA 380 29.69 2j6iA 364 30.03 2ok8A 316 30.22 1dzfA 215 32.03 c.52.3.1,d.78.1.1 33344,39753 1zejA 293 32.19 2q2gA 180 32.88 1v04A 355 33.20 b.68.6.2 100240 1suuA 312 33.26 b.68.10.1 99006 1b80A 351 33.71 a.93.1.1 18579 2pyxA 526 34.33 1hbnB 442 34.46 a.89.1.1,d.58.31.2 60900,60901 2q91A 101 34.90 2gj2A 85 35.48 1wkbA 810 37.11 1topA 162 37.26 a.39.1.5 17223 2auwA 170 37.77 a.35.1.10,d.331.1.1 127339,127340 2r7dA 469 39.70 2ho3A 325 39.78 1sdiA 213 40.03 a.198.1.1 105437 1sc6A 404 40.32 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2q3uA 383 41.58 d.126.1.6 139809 1aua 296 42.08 1cjaA 342 42.51 d.144.1.3 41708 1ms9A 648 43.05 b.29.1.15,b.68.1.1 85088,85089 1yfnA 118 43.83 b.136.1.1 123080 2op6A 152 44.31 2hu5A 582 45.47 b.69.7.2,c.69.1.33 136763,136764 2aytA 237 45.68 1iugA 352 45.92 c.67.1.3 90699 2qneA 495 46.80 3cbuA 214 47.45 1vliA 385 47.48 b.85.1.1,c.1.10.6 108830,108831 2jfgA 445 47.66 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2v2fF 390 47.73 1tdzA 272 48.17 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1sesA 421 48.31 a.2.7.1,d.104.1.1 15710,40710 2uzxB 727 49.31 1pieA 419 50.11 d.14.1.5,d.58.26.7 94706,94707 1f7sA 139 51.33 d.109.1.2 40857 1or0B 528 51.66 1pcfA 66 51.78 d.18.1.1 38142 1xf1A 926 53.78 2a9gA 418 55.41 d.126.1.4 126435 1wb0A 445 55.46 c.1.8.5,d.26.3.1 120825,120826 1xovA 326 56.06 b.34.11.4,c.56.5.6 122206,122207 1vqoW 154 57.00 d.59.1.1 120384 1y791 680 59.44 1mj3A 260 61.11 c.14.1.3 79183 1mrgA 263 62.03 d.165.1.1 42183 2i2lA 142 62.75 1yf2A 425 63.82 d.287.1.2,d.287.1.2 123042,123043 1wdkC 390 66.04 c.95.1.1,c.95.1.1 109258,109259 2gn4A 344 66.46 2oaaA 249 68.50 3bpkA 206 68.94 1mxsA 225 69.22 c.1.10.1 91494 1xo0A 324 69.79 a.60.9.1,d.163.1.1 115674,115675 2r11A 306 70.79 1k82A 268 72.56 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 2nutC 196 74.06 2vh1A 220 75.26 3ck6A 252 75.71 3b79A 129 76.91 1b85A 351 76.98 a.93.1.1 18581 1vr5A 547 78.54 c.94.1.1 120437 1yydA 357 78.67 a.93.1.1 124212 1q2hA 69 78.73 a.34.4.1 104498 2ihoA 293 79.00 1t0tV 248 79.15 d.58.4.10 106229 2dvmA 439 79.21 2ae5B 528 79.24 1mwvA 714 83.27 a.93.1.3,a.93.1.3 85161,85162 3bi1A 709 84.33 1u08A 386 84.44 c.67.1.1 107543 1pn0A 665 84.62 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 2o66A 135 85.19 1l5oA 356 85.79 c.39.1.1 77711 1llpA 343 86.18 a.93.1.1 18578 2gruA 368 86.81 1w1hA 151 88.39 b.55.1.1 114076 1vetB 125 89.54 d.110.7.1 108554