# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	5.82e-11		
1k82A	268	2.350	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
2yzsA	315	9.99		
2j8sA	1055	12.48		
2himA	358	18.02		
2ywmA	229	21.62		
2gjgA	248	25.28		
2auwA	170	29.93	a.35.1.10,d.331.1.1	127339,127340
1hdhA	536	31.51	c.76.1.2	65805
1tdzA	272	33.12	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
2vh1A	220	36.51		
1nkqA	259	37.89	d.177.1.1	103862
1zcbA	362	38.68	a.66.1.1,c.37.1.8	124901,124902
1r5lA	262	42.62	a.5.3.1,c.13.1.1	97099,97100
1sg5A	86	45.71	b.137.1.2	118960
1ou8A	111	46.23	b.136.1.1	93543
2gifA	1057	48.71		
2bbhA	269	52.95	d.328.1.1	128266
1gg3A	279	56.34	a.11.2.1,b.55.1.5,d.15.1.4	16372,27007,37615
8abp	306	56.82		
1yfnA	118	61.44	b.136.1.1	123080
1c8cA	64	66.52	b.34.13.1	59084
2j5gA	263	67.29		
1v10A	521	67.63	b.6.1.3,b.6.1.3,b.6.1.3	108224,108225,108226
1t61C	227	67.64	d.169.1.6,d.169.1.6	106533,106534
1pcfA	66	69.61	d.18.1.1	38142
1g62A	224	71.65	d.126.1.1	41128
2guiA	194	73.34	c.55.3.5	135737
2rcvA	202	81.13		
1jhdA	396	81.88	b.122.1.3,c.26.1.5	66712,66713
1vetB	125	82.37	d.110.7.1	108554
1vr5A	547	82.72	c.94.1.1	120437
2e7dA	131	82.91		
2ebjA	192	84.64		
2nutC	196	86.14		
1e8gA	560	87.58	d.58.32.1,d.145.1.1	39455,41718
2aytA	237	88.09		
1mixA	206	89.16	a.11.2.1,b.55.1.5	79166,79167