# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	2.71e-11		
1k82A	268	5.932	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
2aeeA	211	12.67	c.61.1.1	126620
1zcbA	362	14.42	a.66.1.1,c.37.1.8	124901,124902
2gjgA	248	14.81		
1r5lA	262	25.73	a.5.3.1,c.13.1.1	97099,97100
2j8sA	1055	28.78		
2yzsA	315	37.62		
1yfnA	118	37.70	b.136.1.1	123080
1y8cA	246	38.45	c.66.1.43	116563
1tdzA	272	43.84	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1ou8A	111	44.32	b.136.1.1	93543
2bvfA	459	46.80		
1in4A	334	48.52	a.4.5.11,c.37.1.20	62597,62598
2mbrA	340	52.92	d.145.1.2,d.146.1.1	41749,41762
1hdhA	536	55.14	c.76.1.2	65805
3c8lA	122	56.70		
1fdr	248	56.77		
1a53	247	57.17		
3b7nA	320	57.54		
1vr5A	547	59.16	c.94.1.1	120437
1nkqA	259	60.42	d.177.1.1	103862
1g61A	228	61.11	d.126.1.1	41126
2guiA	194	61.50	c.55.3.5	135737
1azsC	388	63.38	a.66.1.1,c.37.1.8	18203,32086
1g6eA	87	71.26	b.11.1.6	60317
3bxoA	239	76.19		
2b0aA	186	76.61	c.8.8.1	127632
2auwA	170	77.06	a.35.1.10,d.331.1.1	127339,127340
1uxy	340	80.04		
1alyA	146	81.98	b.22.1.1	23856
2ebjA	192	85.51		
1gg3A	279	85.90	a.11.2.1,b.55.1.5,d.15.1.4	16372,27007,37615
1qb7A	236	86.14	c.61.1.1	34087
1aua	296	88.21		
2nutC	196	88.47		
2ywmA	229	89.28		
1jhdA	396	89.89	b.122.1.3,c.26.1.5	66712,66713