# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	2.28e-10		
1k82A	268	8.403	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
2yzsA	315	15.79		
1zcbA	362	24.44	a.66.1.1,c.37.1.8	124901,124902
1g61A	228	25.39	d.126.1.1	41126
1r5lA	262	27.64	a.5.3.1,c.13.1.1	97099,97100
2j8sA	1055	29.79		
1y8cA	246	32.03	c.66.1.43	116563
1yfnA	118	32.82	b.136.1.1	123080
1ou8A	111	33.38	b.136.1.1	93543
2gjgA	248	33.49		
3bxoA	239	33.95		
2aeeA	211	38.08	c.61.1.1	126620
2ywlA	180	42.05		
2mbrA	340	42.28	d.145.1.2,d.146.1.1	41749,41762
2vh1A	220	45.05		
3b79A	129	45.96		
2auwA	170	47.58	a.35.1.10,d.331.1.1	127339,127340
2himA	358	53.89		
1s7mA	174	58.97	b.144.1.1	98649
1uxy	340	59.21		
1gg3A	279	62.32	a.11.2.1,b.55.1.5,d.15.1.4	16372,27007,37615
1hdhA	536	63.32	c.76.1.2	65805
3bijA	285	63.98		
2ebjA	192	64.95		
2bvfA	459	67.02		
1in4A	334	68.24	a.4.5.11,c.37.1.20	62597,62598
2gifA	1057	69.54		
1g62A	224	71.20	d.126.1.1	41128
1sg5A	86	71.89	b.137.1.2	118960
1nkqA	259	76.54	d.177.1.1	103862
1uxyA	340	78.26	d.145.1.2,d.146.1.1	41748,41761
1tdzA	272	81.65	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1vetB	125	83.53	d.110.7.1	108554
1aua	296	84.29		
1fdr	248	86.18		
2nutC	196	86.88		
1a53	247	89.13		
1auaA	296	89.23	a.5.3.1,c.13.1.1	16290,30882