# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	9.98e-11		
1k82A	268	8.856	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
2vh1A	220	15.53		
2j8sA	1055	15.58		
2yzsA	315	15.68		
1r5lA	262	24.83	a.5.3.1,c.13.1.1	97099,97100
2ebjA	192	33.72		
2auwA	170	35.64	a.35.1.10,d.331.1.1	127339,127340
2ywlA	180	36.67		
1ou8A	111	37.45	b.136.1.1	93543
2aeeA	211	38.79	c.61.1.1	126620
3b79A	129	39.14		
2z2iA	191	41.06		
2himA	358	41.62		
2gifA	1057	42.43		
1zcbA	362	43.38	a.66.1.1,c.37.1.8	124901,124902
1in4A	334	46.37	a.4.5.11,c.37.1.20	62597,62598
1yfnA	118	48.08	b.136.1.1	123080
2nutC	196	49.21		
1g61A	228	53.01	d.126.1.1	41126
1y8cA	246	55.62	c.66.1.43	116563
1fdr	248	56.14		
1ywyA	74	56.92	b.55.2.1	124166
1gg3A	279	58.02	a.11.2.1,b.55.1.5,d.15.1.4	16372,27007,37615
2bvfA	459	58.48		
3bxoA	239	58.53		
1vetB	125	60.42	d.110.7.1	108554
1a53	247	62.09		
3bijA	285	63.23		
2guiA	194	63.96	c.55.3.5	135737
2e5yA	133	65.81		
2mbrA	340	67.07	d.145.1.2,d.146.1.1	41749,41762
1c8cA	64	69.24	b.34.13.1	59084
1s7mA	174	71.10	b.144.1.1	98649
2ih8A	559	74.25	b.6.1.3,b.6.1.3,b.6.1.3	137407,137408,137409
2a2pA	129	75.01	c.47.1.23	126051
1tdzA	272	75.07	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1ifqA	138	76.67	d.110.4.1	62350
2qe7H	135	77.46		
2gjgA	248	77.66		
1vr5A	547	77.83	c.94.1.1	120437
1sg5A	86	78.74	b.137.1.2	118960
1g6eA	87	79.00	b.11.1.6	60317
1xyiA	66	85.34		
1jhdA	396	85.85	b.122.1.3,c.26.1.5	66712,66713
1a12A	413	86.84	b.69.5.1	27663
1i4nA	251	89.90	c.1.2.4	71114