# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	8.32e-11		
2vh1A	220	5.492		
2bbhA	269	8.849	d.328.1.1	128266
2a1hA	365	19.10	e.17.1.1	125997
2yzsA	315	19.48		
1k82A	268	22.42	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
2ja9A	175	24.81		
1vetB	125	26.69	d.110.7.1	108554
1clc	639	27.30		
1rsgA	516	31.49		
2fa1A	160	33.09	d.190.1.2	133182
2j6vA	301	34.76		
2yxdA	183	35.98		
1a79A	171	36.05	c.52.2.1,d.75.1.1	33340,39739
2j3mA	572	36.33		
1ruwA	69	39.31		
1h4vB	421	41.29	c.51.1.1,d.104.1.1	60624,60625
2olnA	397	41.35		
1g6eA	87	49.84	b.11.1.6	60317
1twdA	256	49.86	c.1.30.1	107397
2h29A	189	51.71		
1cbfA	285	60.57	c.90.1.1	35587
1sg5A	86	60.62	b.137.1.2	118960
1tdzA	272	62.38	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1kkhA	317	67.71	d.14.1.5,d.58.26.3	72645,72646
1dfuP	94	72.44	b.53.1.1	26936
2ywlA	180	73.57		
1dq3A	454	73.79	b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2	28380,38798,40585,40586
1vliA	385	77.14	b.85.1.1,c.1.10.6	108830,108831