# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	1.59e-12		
2vh1A	220	7.375		
2aeeA	211	17.80	c.61.1.1	126620
2bbhA	269	23.36	d.328.1.1	128266
1lbaA	146	26.21	d.118.1.1	41062
1vetB	125	28.44	d.110.7.1	108554
2q9kA	151	28.95		
1a53	247	29.33		
1i4nA	251	29.51	c.1.2.4	71114
1r5lA	262	33.01	a.5.3.1,c.13.1.1	97099,97100
1g6eA	87	35.32	b.11.1.6	60317
1fi4A	416	38.04	d.14.1.5,d.58.26.2	59847,59848
1fdr	248	38.17		
1yllA	200	41.64	b.82.1.17	123653
2yzsA	315	42.15		
1sg5A	86	45.19	b.137.1.2	118960
3b7nA	320	46.66		
2nutC	196	46.96		
1g8sA	230	48.21	c.66.1.3	90507
1fdrA	248	49.18	b.43.4.2,c.25.1.1	25653,31543
2j3mA	572	54.73		
1kkhA	317	55.67	d.14.1.5,d.58.26.3	72645,72646
1fs0E	138	59.35	a.2.10.1,b.93.1.1	59997,59998
2v9kA	530	64.93		
2e5yA	133	65.47		
1ug1A	92	69.71	b.34.2.1	99360
2f7tA	227	75.52		
2qe7H	135	79.94		
1a15A	67	81.86	d.9.1.1	37451
3bidA	64	83.02		
1gg3A	279	85.38	a.11.2.1,b.55.1.5,d.15.1.4	16372,27007,37615
2uzhA	165	86.62		
1dzfA	215	87.08	c.52.3.1,d.78.1.1	33344,39753
1auaA	296	88.27	a.5.3.1,c.13.1.1	16290,30882
3c9qA	205	88.31		
1lh0A	213	89.68	c.61.1.1	73896