# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bs1A 103 1.54e-09 1c8cA 64 1.364 b.34.13.1 59084 1h9mA 145 2.347 b.40.6.2,b.40.6.2 60833,60834 2fibA 269 2.811 d.171.1.1 42457 2d4qA 257 3.057 2f1lA 187 3.537 b.41.1.4,b.43.3.4 132780,132781 2j5zA 221 8.477 3fibA 249 10.85 d.171.1.1 42455 1ywuA 149 12.98 b.45.2.1 124164 1s21A 206 13.15 d.166.1.4 105222 1y56B 382 14.18 1eazA 125 15.12 b.55.1.1 70113 1xyiA 66 15.87 2qgvA 140 17.06 1wmhA 89 17.31 d.15.2.2 114744 1os8A 223 17.99 b.47.1.1 93481 2e0qA 104 18.50 1wmhB 86 18.85 d.15.2.2 114745 1i4uA 181 19.14 b.60.1.1 61732 1w1hA 151 19.30 b.55.1.1 114076 2nptA 106 19.58 d.15.2.2 138448 1erv 105 20.37 3fib 249 20.84 1xxaA 78 20.86 d.74.2.1 39700 2gclA 261 21.37 b.55.1.10 134991 2hc8A 113 22.30 2in5A 207 23.25 1nr4A 71 24.09 d.9.1.1 92077 2oe3A 114 25.55 1f9rA 70 26.87 d.9.1.1 90484 1mixA 206 27.03 a.11.2.1,b.55.1.5 79166,79167 3il8A 72 28.40 d.9.1.1 37356 2ra4A 76 29.03 2jc9A 555 29.30 1b9mA 265 29.83 a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1ttwA 138 31.19 d.198.1.1 107308 1faoA 126 31.41 b.55.1.1 26974 1r9fA 136 31.72 d.255.1.1 97257 1zbpA 273 32.02 e.61.1.1 124861 1ng2A 193 34.31 b.34.2.1,b.34.2.1 85660,85661 1iseA 185 34.63 d.67.3.1 90691 2jexA 209 35.45 1o1zA 234 35.81 c.1.18.3 86555 1f9mA 112 35.96 c.47.1.1 32736 1oo0A 147 37.60 d.232.1.1 87182 1v5pA 126 37.68 b.55.1.1 108382 1jmoA 480 37.85 e.1.1.1 77138 1f2lA 76 40.33 d.9.1.1 37436 3beuA 224 41.83 1b3aA 67 42.95 d.9.1.1 37410 1dfuP 94 43.33 b.53.1.1 26936 2jhmF 218 44.31 1wj6A 101 45.38 d.15.2.2 114693 1ryiA 382 46.22 c.3.1.2,d.16.1.3 118813,118814 2q8rE 66 47.98 2j0aA 280 49.59 2c5qA 240 50.60 2yzuA 109 51.50 1xppA 115 52.16 d.74.3.2 115768 2ox4A 403 52.38 2qggA 182 52.59 2ifqA 105 52.90 c.47.1.1 137343 2iwtA 125 53.69 2auwA 170 54.44 a.35.1.10,d.331.1.1 127339,127340 2oauA 306 54.80 b.38.1.3,d.58.43.1,f.34.1.1 138978,138979,138980 2qqrA 118 55.77 2hthB 140 56.19 b.55.1.12 136743 1g6eA 87 57.45 b.11.1.6 60317 1dokA 77 58.36 d.9.1.1 37420 1txdA 385 59.69 a.87.1.1,b.55.1.1 107422,107423 1uhgA 385 59.74 e.1.1.1 88491 1tvxA 75 59.79 d.9.1.1 37441 1h6hA 143 60.38 d.189.1.1 65681 1s28A 132 61.19 d.198.1.1 105223 2es7A 142 61.84 c.47.1.20 132314 1aqcA 172 63.47 b.55.1.2 26983 2v6vA 156 64.80 2gagB 405 68.12 2v14A 134 68.47 2pw9A 268 68.48 2fhdA 153 70.09 2d39A 237 71.10 2a19A 175 71.41 2vluA 122 71.79 1dbxA 158 72.19 d.116.1.1 40928 3b77A 193 74.88 1t1vA 93 75.43 c.47.1.14 106278 1u5fA 148 76.25 b.55.1.1 119542 1uebA 184 77.27 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 2if6A 186 77.52 1faaA 124 78.83 c.47.1.1 32738 1zxtA 76 81.90 1esrA 76 82.07 d.9.1.1 37427 1t77A 414 82.10 a.169.1.1,b.55.1.6 112290,112291 4ubpB 126 84.33 b.85.3.1 28345 2bjrA 368 85.70 b.169.1.1,b.169.1.1 128628,128629 1a15A 67 86.87 d.9.1.1 37451 1o54A 277 87.10 c.66.1.13 92482