# List of top-scoring protein chains for T0415.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	3.43e-05		
2z1gA	155	40.91		
2fb2A	340	42.45		
1tv8A	340	42.69	c.1.28.3	107352
1n8fA	350	43.41	c.1.10.4	85397
1gg1A	350	43.90	c.1.10.4	29187
2z1jA	155	48.47		
2z1iA	155	48.53		
2meaA	130	52.20	d.2.1.2	36572
1k82A	268	59.09	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
1pr9A	244	70.72	c.2.1.2	95060
1v3aA	173	75.52	c.45.1.1	113499
1y10A	407	75.64		
1r6hA	172	77.97	c.45.1.1	97150
2uy9A	385	78.95		
1rhfA	182	79.21	b.1.1.1,b.1.1.4	97469,97470
2uy8A	385	79.68		
2v09A	385	79.78		
1j58A	385	80.61	b.82.1.2	71531
2uybA	385	80.70		
1tfsA	60	82.11	g.7.1.1	44423
1mjgM	729	82.92	e.26.1.3	79204
1oaoC	729	83.46	e.26.1.3	86746