# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	1.57e-15		
2auwA	170	4.563	a.35.1.10,d.331.1.1	127339,127340
2yzsA	315	4.820		
1k82A	268	6.859	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
1azpA	66	8.745	b.34.13.1	37467
1gycA	499	10.26	b.6.1.3,b.6.1.3,b.6.1.3	70748,70749,70750
1sf9A	128	15.02	b.34.15.1	98831
1a0pA	290	15.60	a.60.9.1,d.163.1.1	18105,42165
2he7A	283	19.94		
1c8cA	64	20.30	b.34.13.1	59084
1xyiA	66	23.83		
2f51A	118	24.34		
1l1zA	274	25.25	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
1zynA	202	27.55	c.47.1.2,c.47.1.2	125838,125839
2j0aA	280	27.85		
1wmmA	145	28.91	b.122.1.8	121049
1r2zA	274	30.23	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
2rcvA	202	30.26		
2z2iA	191	30.67		
1dfuP	94	31.15	b.53.1.1	26936
1yx1A	264	37.97	c.1.15.7	124169
2aytA	237	41.66		
1jysA	242	42.17	c.56.2.1	77216
2olnA	397	43.76		
1mixA	206	43.97	a.11.2.1,b.55.1.5	79166,79167
1g6eA	87	46.39	b.11.1.6	60317
1in4A	334	47.57	a.4.5.11,c.37.1.20	62597,62598
2cyeA	133	49.22	d.38.1.1	131021
1feuA	206	50.14	b.53.1.1	59801
2cduA	452	50.31		
2e0qA	104	52.23		
2i1uA	121	52.86		
1yd0A	96	55.55		
2esnA	310	56.91	a.4.5.37,c.94.1.1	132333,132334
1a0p	290	60.78		
1b5qA	472	61.97	c.3.1.2,d.16.1.5	30404,37968
1hzdA	272	63.52	c.14.1.3	65969
1iejA	332	65.56	c.94.1.2	62328
2okmA	147	66.84		
2a2pA	129	66.97	c.47.1.23	126051
1ri5A	298	68.29	c.66.1.34	97502
2j01Z	206	70.91		
1yllA	200	71.29	b.82.1.17	123653
2qe7H	135	73.43		
1l9cA	389	73.56	c.3.1.2,d.16.1.3	77815,77816
2capA	376	73.79		
1v47A	349	74.37	b.122.1.3,c.26.1.5	100292,100293
1auaA	296	77.67	a.5.3.1,c.13.1.1	16290,30882
1vetB	125	79.48	d.110.7.1	108554
1qwjA	229	80.59	c.68.1.13	96478
1zpuA	534	80.86		
2gf3A	389	81.20	c.3.1.2,d.16.1.3	135070,135071
1uebA	184	85.57	b.34.5.2,b.40.4.5,b.40.4.5	107782,107783,107784
1yvvA	336	86.32		
1f7sA	139	87.07	d.109.1.2	40857
3c9qA	205	87.10		
1xuqA	212	87.58		
2e5yA	133	88.22		
2dyoA	297	88.41		
2yqcA	486	88.80		
1a2zA	220	89.04	c.56.4.1	33794
2g5fA	450	89.72	d.161.1.1	134654