# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	1.83e-14		
1azpA	66	7.167	b.34.13.1	37467
3bxoA	239	8.550		
2yqcA	486	8.607		
2auwA	170	10.06	a.35.1.10,d.331.1.1	127339,127340
2yzsA	315	12.97		
1c8cA	64	14.70	b.34.13.1	59084
1xyiA	66	17.45		
1a0pA	290	20.70	a.60.9.1,d.163.1.1	18105,42165
1dfuP	94	21.15	b.53.1.1	26936
1wmmA	145	21.70	b.122.1.8	121049
1gycA	499	22.76	b.6.1.3,b.6.1.3,b.6.1.3	70748,70749,70750
1g6eA	87	24.44	b.11.1.6	60317
1k82A	268	30.54	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
1feuA	206	33.83	b.53.1.1	59801
1b5qA	472	35.64	c.3.1.2,d.16.1.5	30404,37968
1mixA	206	37.59	a.11.2.1,b.55.1.5	79166,79167
1yx1A	264	42.32	c.1.15.7	124169
1sf9A	128	44.77	b.34.15.1	98831
3c9qA	205	46.20		
1ywyA	74	47.27	b.55.2.1	124166
1n67A	359	53.83	b.2.3.4,b.2.3.4	85354,85355
2olnA	397	55.95		
1xocA	520	56.89	c.94.1.1	122201
1l1zA	274	57.92	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
1y8cA	246	58.10	c.66.1.43	116563
2he7A	283	58.45		
1cbfA	285	58.45	c.90.1.1	35587
1xexB	172	59.52		
2qe7H	135	59.52		
2j0aA	280	61.07		
1tr8A	102	62.24		
2pzzA	147	63.13		
1jysA	242	65.59	c.56.2.1	77216
1uebA	184	66.39	b.34.5.2,b.40.4.5,b.40.4.5	107782,107783,107784
2dyoA	297	67.20		
1wpgA	994	68.30	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
1yavA	159	74.10	d.37.1.1,d.37.1.1	116595,116596
2rcvA	202	78.65		
2cduA	452	79.49		
1wu7A	434	81.43	c.51.1.1,d.104.1.1	121275,121276
1w1oA	534	81.59	d.58.32.4,d.145.1.1	109071,109072
1yvvA	336	81.78		
1kq6A	141	82.50	d.189.1.1	91020
2pfrA	294	82.88		
1a0p	290	84.37		
2j01Z	206	84.68		
1zpuA	534	89.11