# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bs1A 103 4.31e-17 2yzsA 315 2.206 1azpA 66 4.794 b.34.13.1 37467 1k82A 268 5.584 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 1c8cA 64 6.868 b.34.13.1 59084 1yfnA 118 8.127 b.136.1.1 123080 1r2zA 274 8.172 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 2auwA 170 8.544 a.35.1.10,d.331.1.1 127339,127340 3bxoA 239 9.704 2e5yA 133 10.06 2he7A 283 10.96 1ywyA 74 12.03 b.55.2.1 124166 1l1zA 274 13.67 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1vetB 125 13.90 d.110.7.1 108554 1xyiA 66 16.32 1hskA 326 16.83 d.145.1.2,d.146.1.1 61241,61242 1zvtA 256 21.92 1gycA 499 22.43 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 2e3dA 302 22.91 1tr8A 102 23.81 2z2iA 191 23.87 2bvfA 459 24.40 2cduA 452 24.60 1yx1A 264 28.72 c.1.15.7 124169 2cyeA 133 29.15 d.38.1.1 131021 1y8cA 246 30.01 c.66.1.43 116563 1in4A 334 30.12 a.4.5.11,c.37.1.20 62597,62598 1zr6A 503 30.30 1feuA 206 34.09 b.53.1.1 59801 1ou8A 111 34.39 b.136.1.1 93543 1hxn 219 35.84 2dyoA 297 36.25 1b5qA 472 36.35 c.3.1.2,d.16.1.5 30404,37968 2pzzA 147 36.93 1jysA 242 38.20 c.56.2.1 77216 2ywlA 180 38.45 2ebjA 192 38.91 1q3iA 214 39.79 d.220.1.1 104524 1xexB 172 40.33 2qe7H 135 40.39 1y6uA 70 40.62 1uebA 184 41.49 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1dfuP 94 43.34 b.53.1.1 26936 2vh1A 220 46.98 1ifqA 138 47.63 d.110.4.1 62350 2olnA 397 48.42 1yphE 97 49.51 1k3xA 262 49.56 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 2v9vA 135 50.15 1tifA 78 51.18 d.15.8.1 37836 1tif 78 51.79 1yavA 159 51.85 d.37.1.1,d.37.1.1 116595,116596 1zk7A 467 52.27 1zi0A 307 53.44 1a0pA 290 53.78 a.60.9.1,d.163.1.1 18105,42165 2v3aA 384 56.14 1mixA 206 56.82 a.11.2.1,b.55.1.5 79166,79167 1rtfB 252 56.97 2j01Z 206 57.15 3c9qA 205 57.81 1ee8A 266 57.86 a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1pmmA 466 59.49 c.67.1.6 94901 1g61A 228 59.79 d.126.1.1 41126 1suuA 312 59.90 b.68.10.1 99006 2ra9A 150 59.93 1uuhA 159 60.56 d.169.1.4 100008 1cuk 203 61.05 1m4iA 181 64.43 d.108.1.1 74457 1jv1A 505 66.62 c.68.1.5 71892 1eu3A 210 68.11 b.40.2.2,d.15.6.1 25206,37795 2qdlA 165 69.19 1zpuA 534 70.89 1wrjA 156 71.23 2yugA 155 71.83 1fs0E 138 72.73 a.2.10.1,b.93.1.1 59997,59998 3bijA 285 72.74 1f7sA 139 73.25 d.109.1.2 40857 1tib 269 77.35 1eejA 216 78.48 c.47.1.9,d.17.3.1 33057,38071 1tdzA 272 78.65 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 2b9wA 424 78.91 1gvkB 240 80.35 b.47.1.2 70610 1pjjA 271 80.47 a.156.1.2,b.113.1.1,g.39.1.8 104164,104165,104166 3b79A 129 81.27 1gnd 447 81.35 2capA 376 81.96 2f9nA 245 83.42 1b25A 619 83.58 a.110.1.1,d.152.1.1 19044,41796 1s6lA 212 84.99 2cvjA 180 85.40 1qnjA 240 86.16 b.47.1.2 26238 1ybyA 215 87.42 1qwjA 229 87.44 c.68.1.13 96478 2asuB 234 87.61 1ri5A 298 89.53 c.66.1.34 97502 2okmA 147 89.75 1skoB 130 89.97 d.110.7.1 105677