# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	4.66e-13		
1k82A	268	4.855	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
2yzsA	315	9.153		
1r2zA	274	18.54	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1azpA	66	18.59	b.34.13.1	37467
2z2iA	191	21.43		
1l1zA	274	22.40	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
1m4iA	181	24.03	d.108.1.1	74457
2auwA	170	25.27	a.35.1.10,d.331.1.1	127339,127340
1vetB	125	27.27	d.110.7.1	108554
1c8cA	64	27.66	b.34.13.1	59084
1jysA	242	28.39	c.56.2.1	77216
1in4A	334	30.55	a.4.5.11,c.37.1.20	62597,62598
1wz8A	264	34.14	c.14.1.3	121483
2he7A	283	35.35		
1k3xA	262	39.02	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
1oqkA	97	42.09	b.137.1.1	93419
1xyiA	66	45.64		
2cduA	452	46.41		
1yvvA	336	47.92		
1ht6A	405	48.33	b.71.1.1,c.1.8.1	83629,83630
1a0pA	290	48.35	a.60.9.1,d.163.1.1	18105,42165
1mixA	206	50.08	a.11.2.1,b.55.1.5	79166,79167
1ifqA	138	54.00	d.110.4.1	62350
2nutC	196	54.01		
2f51A	118	55.77		
1tr8A	102	60.51		
2pfrA	294	61.24		
2vh1A	220	61.35		
1wmmA	145	62.66	b.122.1.8	121049
1uebA	184	65.12	b.34.5.2,b.40.4.5,b.40.4.5	107782,107783,107784
1hzdA	272	66.33	c.14.1.3	65969
2polA	366	66.45	d.131.1.1,d.131.1.1,d.131.1.1	41356,41357,41358
2bcgG	453	66.50	c.3.1.3,c.3.1.3,d.16.1.6	128282,128283,128284
1sf9A	128	70.79	b.34.15.1	98831
1zynA	202	70.92	c.47.1.2,c.47.1.2	125838,125839
1ynfA	458	73.46	d.126.1.7	123723
1m6iA	493	73.67	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
2rgqA	144	74.11		
2v3aA	384	75.82		
2yqcA	486	76.60		
1feuA	206	77.37	b.53.1.1	59801
2dyoA	297	79.39		
1cipA	353	85.27	a.66.1.1,c.37.1.8	18210,32093
1qwjA	229	86.27	c.68.1.13	96478
2od0A	105	87.69		
1zk7A	467	88.79