# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	1.32e-13		
1k82A	268	6.383	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
2yzsA	315	9.743		
2z2iA	191	18.81		
2auwA	170	18.93	a.35.1.10,d.331.1.1	127339,127340
1in4A	334	20.77	a.4.5.11,c.37.1.20	62597,62598
1l1zA	274	23.03	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
1r2zA	274	23.19	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1wmmA	145	24.78	b.122.1.8	121049
1m4iA	181	29.89	d.108.1.1	74457
1vetB	125	30.12	d.110.7.1	108554
2yqcA	486	31.10		
1jysA	242	33.08	c.56.2.1	77216
1a0pA	290	33.87	a.60.9.1,d.163.1.1	18105,42165
2rgqA	144	34.17		
2nutC	196	34.33		
1wz8A	264	40.91	c.14.1.3	121483
1k3xA	262	49.87	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
1qwjA	229	50.32	c.68.1.13	96478
1sf9A	128	51.56	b.34.15.1	98831
2j0aA	280	51.83		
1hzdA	272	54.73	c.14.1.3	65969
1eziA	228	55.40	c.68.1.13	34512
1cipA	353	57.66	a.66.1.1,c.37.1.8	18210,32093
2dyoA	297	62.07		
1azpA	66	63.09	b.34.13.1	37467
1zvtA	256	63.29		
1oqkA	97	64.23	b.137.1.1	93419
1azsC	388	65.44	a.66.1.1,c.37.1.8	18203,32086
1ifqA	138	67.21	d.110.4.1	62350
1ht6A	405	68.74	b.71.1.1,c.1.8.1	83629,83630
2g5fA	450	69.05	d.161.1.1	134654
1n91A	108	69.23	d.206.1.1	80326
1g6eA	87	69.89	b.11.1.6	60317
1y8cA	246	73.41	c.66.1.43	116563
1in6A	334	73.67	a.4.5.11,c.37.1.20	62601,62602
1v47A	349	74.89	b.122.1.3,c.26.1.5	100292,100293
2he7A	283	77.35		
2px7A	236	78.93		
1c8cA	64	79.15	b.34.13.1	59084
2bcgG	453	81.12	c.3.1.3,c.3.1.3,d.16.1.6	128282,128283,128284
1mixA	206	81.94	a.11.2.1,b.55.1.5	79166,79167
1uf3A	228	82.30	d.159.1.6	99317
2cyeA	133	82.98	d.38.1.1	131021
2jsxA	95	83.64		
1xocA	520	84.77	c.94.1.1	122201
1eg5A	384	86.61	c.67.1.3	34429
1ri5A	298	86.78	c.66.1.34	97502
1gycA	499	87.30	b.6.1.3,b.6.1.3,b.6.1.3	70748,70749,70750
1zcaA	359	89.97	a.66.1.1,c.37.1.8	124897,124898
1yx1A	264	89.99	c.1.15.7	124169