# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	1.24e-13		
1k82A	268	7.027	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
2yzsA	315	10.60		
2auwA	170	13.71	a.35.1.10,d.331.1.1	127339,127340
2z2iA	191	16.92		
1wmmA	145	25.20	b.122.1.8	121049
1jysA	242	26.62	c.56.2.1	77216
1in4A	334	26.88	a.4.5.11,c.37.1.20	62597,62598
1vetB	125	28.74	d.110.7.1	108554
1l1zA	274	29.01	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
2yqcA	486	30.60		
1r2zA	274	30.80	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1a0pA	290	31.16	a.60.9.1,d.163.1.1	18105,42165
2rgqA	144	34.45		
1m4iA	181	34.69	d.108.1.1	74457
2j0aA	280	35.96		
1oqkA	97	36.86	b.137.1.1	93419
2nutC	196	39.13		
1sf9A	128	39.38	b.34.15.1	98831
1k3xA	262	45.11	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
1v47A	349	47.71	b.122.1.3,c.26.1.5	100292,100293
1wz8A	264	47.81	c.14.1.3	121483
1cipA	353	48.78	a.66.1.1,c.37.1.8	18210,32093
1eziA	228	53.13	c.68.1.13	34512
2bcgG	453	53.97	c.3.1.3,c.3.1.3,d.16.1.6	128282,128283,128284
1qwjA	229	54.88	c.68.1.13	96478
2dyoA	297	56.74		
1g6eA	87	56.93	b.11.1.6	60317
1ht6A	405	57.45	b.71.1.1,c.1.8.1	83629,83630
2he7A	283	57.65		
1azsC	388	60.98	a.66.1.1,c.37.1.8	18203,32086
1uf3A	228	61.77	d.159.1.6	99317
1azpA	66	62.45	b.34.13.1	37467
2f51A	118	63.66		
1zynA	202	67.47	c.47.1.2,c.47.1.2	125838,125839
1c8cA	64	69.74	b.34.13.1	59084
1xocA	520	72.02	c.94.1.1	122201
1ynfA	458	73.94	d.126.1.7	123723
1hzdA	272	74.87	c.14.1.3	65969
1ifqA	138	75.59	d.110.4.1	62350
1y8cA	246	76.00	c.66.1.43	116563
1zvtA	256	77.28		
2g5fA	450	77.80	d.161.1.1	134654
1zcaA	359	80.23	a.66.1.1,c.37.1.8	124897,124898
1gycA	499	80.52	b.6.1.3,b.6.1.3,b.6.1.3	70748,70749,70750
3cp3A	148	82.38		
1tr8A	102	83.04		
2px7A	236	83.10		
1yx1A	264	84.24	c.1.15.7	124169
1n91A	108	85.64	d.206.1.1	80326
2jsxA	95	87.41		
1zlqA	502	88.27	c.94.1.1	125253