# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	4.49e-17		
2yzsA	315	3.662		
1g6eA	87	12.19	b.11.1.6	60317
2e5yA	133	12.97		
2z2iA	191	13.80		
1yvkA	163	14.33	d.108.1.1	124101
1wmmA	145	17.84	b.122.1.8	121049
2qe7H	135	19.33		
1c8cA	64	20.42	b.34.13.1	59084
1tfjA	219	20.71		
1k82A	268	23.25	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
1in4A	334	25.29	a.4.5.11,c.37.1.20	62597,62598
2rgqA	144	25.41		
2uubP	88	28.53	d.27.1.1	139947
2vh1A	220	34.32		
1azpA	66	37.14	b.34.13.1	37467
1c96A	753	38.70	c.8.2.1,c.83.1.1	30727,35403
2vqeP	88	40.26		
1dfuP	94	42.10	b.53.1.1	26936
1xexB	172	44.86		
1a0pA	290	45.04	a.60.9.1,d.163.1.1	18105,42165
2ar1A	172	46.66	b.122.1.8	127187
1yx1A	264	47.26	c.1.15.7	124169
1cbfA	285	47.44	c.90.1.1	35587
1tedA	393	53.24	c.95.1.2	106807
1zeeA	403	54.97	a.266.1.2	124981
1sg4A	260	55.57	c.14.1.3	118957
1tifA	78	61.88	d.15.8.1	37836
1hnjA	317	62.33	c.95.1.2,c.95.1.2	35969,35970
2j01Z	206	62.87		
1xrsB	262	64.99	c.23.6.1,d.230.4.1	115884,115885
1vkpA	383	66.14	d.126.1.6	108686
1afwA	393	67.91	c.95.1.1,c.95.1.1	35900,35901
1tif	78	68.85		
1wl4A	397	70.18		
1ehxA	94	71.04	b.1.18.13	21950
2ipxA	233	71.61		
2b3yA	888	78.40	c.8.2.1,c.83.1.1	127803,127804
3bciA	186	79.23		
2pthA	193	80.30	c.56.3.1	33793
1m4tA	392	80.36	c.95.1.1,c.95.1.1	78617,78618
2px7A	236	80.68		
1q74A	303	83.48	c.134.1.1	96019
1i60A	278	86.07	c.1.15.4	71118
1udmA	149	87.69	d.109.1.2	107780
1in6A	334	89.70	a.4.5.11,c.37.1.20	62601,62602