# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	1.25e-14		
1k82A	268	2.371	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
2yzsA	315	2.595		
1azpA	66	10.18	b.34.13.1	37467
1r2zA	274	13.22	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1mixA	206	13.25	a.11.2.1,b.55.1.5	79166,79167
1l1zA	274	13.43	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
2auwA	170	13.78	a.35.1.10,d.331.1.1	127339,127340
1c8cA	64	15.07	b.34.13.1	59084
2he7A	283	19.22		
1xyiA	66	21.70		
2e5yA	133	24.66		
1jysA	242	26.11	c.56.2.1	77216
1vetB	125	28.75	d.110.7.1	108554
2cduA	452	29.49		
1b5qA	472	29.80	c.3.1.2,d.16.1.5	30404,37968
1m4iA	181	30.15	d.108.1.1	74457
2nutC	196	30.52		
2q35A	243	34.40		
1yx1A	264	36.52	c.1.15.7	124169
1dfuP	94	38.59	b.53.1.1	26936
1a3yA	149	38.78	b.60.1.1	27110
1in4A	334	42.70	a.4.5.11,c.37.1.20	62597,62598
1tr8A	102	44.00		
1zk7A	467	44.50		
1wpgA	994	47.29	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
1k3xA	262	48.11	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
2v3aA	384	50.26		
1feuA	206	51.36	b.53.1.1	59801
2gf3A	389	58.12	c.3.1.2,d.16.1.3	135070,135071
1l9cA	389	58.16	c.3.1.2,d.16.1.3	77815,77816
2pzzA	147	62.55		
1hzdA	272	63.09	c.14.1.3	65969
1yvkA	163	64.22	d.108.1.1	124101
2rcvA	202	64.65		
2z2iA	191	64.94		
1oqkA	97	67.56	b.137.1.1	93419
1sf9A	128	72.05	b.34.15.1	98831
1uebA	184	72.33	b.34.5.2,b.40.4.5,b.40.4.5	107782,107783,107784
2yqcA	486	72.56		
1nzyA	269	73.17	c.14.1.3	30903
1ht6A	405	74.31	b.71.1.1,c.1.8.1	83629,83630
2capA	376	76.80		
2r9zA	463	77.09		
1cipA	353	77.24	a.66.1.1,c.37.1.8	18210,32093
1cuk	203	79.34		
1g62A	224	79.53	d.126.1.1	41128
1m0uA	249	83.78	a.45.1.1,c.47.1.5	78359,78360
1wmmA	145	85.15	b.122.1.8	121049
1ee8A	266	85.20	a.156.1.2,b.113.1.1,g.39.1.8	75823,75824,75825
1ifqA	138	85.23	d.110.4.1	62350
1iejA	332	89.62	c.94.1.2	62328