# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bs1A 103 2.47e-17 1d4fA 431 0.8913 c.2.1.4,c.23.12.3 30110,31370 1vf8A 377 1.322 c.1.8.5,d.26.3.1 120029,120030 2yzsA 315 1.635 1eg5A 384 1.759 c.67.1.3 34429 1sc6A 404 2.348 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1si6X 282 2.391 d.151.1.2 118968 1i8aA 189 3.395 b.1.9.2 61951 2yqcA 486 3.458 1yspA 181 4.560 1hbnB 442 6.153 a.89.1.1,d.58.31.2 60900,60901 1mroB 442 9.427 a.89.1.1,d.58.31.2 18531,39449 1wl7A 312 9.843 b.67.2.1 120996 2h88B 252 13.43 2auwA 170 13.54 a.35.1.10,d.331.1.1 127339,127340 1ylnA 252 14.13 b.45.2.1,b.45.2.2 123657,123658 1zk7A 467 14.51 2gjgA 248 14.61 1owqA 361 15.29 c.1.8.5,d.26.3.1 104041,104042 1w1oA 534 17.76 d.58.32.4,d.145.1.1 109071,109072 1jftA 340 18.12 a.35.1.5,c.93.1.1 66652,66653 1u4bA 580 19.11 c.55.3.5,e.8.1.1 107664,107665 1suuA 312 19.49 b.68.10.1 99006 1wb0A 445 20.51 c.1.8.5,d.26.3.1 120825,120826 1v47A 349 21.69 b.122.1.3,c.26.1.5 100292,100293 2hziA 277 22.19 1r85A 379 25.72 c.1.8.3 104839 2aeeA 211 26.50 c.61.1.1 126620 1l1qA 186 26.98 c.61.1.1 77653 1g5hA 454 27.55 c.51.1.1,d.104.1.1 60270,60271 1ms9A 648 27.99 b.29.1.15,b.68.1.1 85088,85089 1c30B 382 28.18 c.8.3.1,c.23.16.1 30736,31413 2op6A 152 28.19 1or0B 528 28.92 1gweA 503 31.37 e.5.1.1 70667 1tk1A 260 31.44 d.248.1.1 107066 1mqoA 227 31.74 d.157.1.1 103846 1hkkA 364 33.00 c.1.8.5,d.26.3.1 90634,90635 2heuA 401 33.23 2qf3A 243 33.48 2gj2A 85 34.77 2dxnA 274 34.94 1oqkA 97 39.77 b.137.1.1 93419 1vb3A 428 40.46 c.79.1.1 119942 2e5vA 472 40.48 2p4oA 306 40.57 1pyaB 228 41.51 1c8cA 64 41.75 b.34.13.1 59084 1z90A 469 42.39 b.81.1.4,c.68.1.5 124732,124733 1k3xA 262 42.73 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 3bpkA 206 43.06 1q3iA 214 43.06 d.220.1.1 104524 1sf9A 128 43.24 b.34.15.1 98831 2rmcA 182 43.24 b.62.1.1 27491 1v2dA 381 43.36 c.67.1.1 108281 2h5gA 463 46.51 3bkbA 377 47.22 2pa4A 323 47.32 1txnA 328 47.41 d.248.1.1 112779 1pjhA 280 48.01 c.14.1.3 94761 1qpaA 345 50.89 a.93.1.1 18585 1yvvA 336 51.14 1cauB 184 52.12 b.82.1.2 28103 3proC 166 52.22 d.52.1.1,d.52.1.1 38812,38813 2q2gA 180 53.07 2f6kA 307 54.47 c.1.9.15 133047 1ihgA 370 54.59 a.118.8.1,b.62.1.1 62380,62381 1hjxA 362 55.43 c.1.8.5,d.26.3.1 83512,83513 1azpA 66 55.50 b.34.13.1 37467 2q3uA 383 55.75 d.126.1.6 139809 2nn6B 249 56.48 2nutC 196 56.94 1l5oA 356 60.60 c.39.1.1 77711 2v4bA 300 62.23 2vd6A 503 63.07 1mwvA 714 64.42 a.93.1.3,a.93.1.3 85161,85162 1u08A 386 64.99 c.67.1.1 107543 2he7A 283 65.06 1auaA 296 65.67 a.5.3.1,c.13.1.1 16290,30882 1opr 213 68.88 2ok8A 316 68.98 1eu3A 210 71.50 b.40.2.2,d.15.6.1 25206,37795 1w1kA 560 71.66 d.58.32.1,d.145.1.1 109059,109060 2r78A 117 72.06 1kt6A 183 72.46 b.60.1.1 84466 2o3hA 285 73.43 1agjA 242 73.88 b.47.1.1 25827 1xocA 520 75.21 c.94.1.1 122201 2p8rA 273 75.77 2h3bA 494 76.37 1rwzA 245 76.82 d.131.1.2,d.131.1.2 98005,98006 1k82A 268 79.03 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 1gpuA 680 79.13 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1lycA 343 79.35 a.93.1.1 74344 1tr8A 102 81.92 1t0tV 248 82.58 d.58.4.10 106229 1ht6A 405 83.20 b.71.1.1,c.1.8.1 83629,83630 1b5qA 472 83.28 c.3.1.2,d.16.1.5 30404,37968 1hc7A 477 85.26 c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1yp2A 451 85.31 b.81.1.4,c.68.1.6 123798,123799 1xyiA 66 86.08 1kuxA 207 86.20 d.108.1.1 73021 1u7bA 261 86.78 d.131.1.2,d.131.1.2 113083,113084 2e7dA 131 87.13 1dfuP 94 88.01 b.53.1.1 26936 1pguA 615 88.13 b.69.4.1,b.69.4.1 88069,88070 2a2nA 176 88.24 b.62.1.1 126041 1plq 258 88.58