# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	2.71e-14		
1k82A	268	3.936	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
2yzsA	315	8.523		
2auwA	170	13.68	a.35.1.10,d.331.1.1	127339,127340
1l1zA	274	20.54	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
1r2zA	274	21.96	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1mixA	206	23.43	a.11.2.1,b.55.1.5	79166,79167
1sf9A	128	29.01	b.34.15.1	98831
1azpA	66	29.87	b.34.13.1	37467
1m4iA	181	33.72	d.108.1.1	74457
1yx1A	264	37.48	c.1.15.7	124169
2yqcA	486	41.61		
1dfuP	94	44.23	b.53.1.1	26936
1hzdA	272	44.82	c.14.1.3	65969
1jysA	242	51.89	c.56.2.1	77216
2rgqA	144	52.25		
1k3xA	262	55.68	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
1gycA	499	56.58	b.6.1.3,b.6.1.3,b.6.1.3	70748,70749,70750
1vetB	125	59.13	d.110.7.1	108554
2capA	376	60.55		
2z2iA	191	60.89		
1b5qA	472	64.93	c.3.1.2,d.16.1.5	30404,37968
1c8cA	64	66.99	b.34.13.1	59084
2e7dA	131	67.30		
1jv1A	505	67.74	c.68.1.5	71892
1wmmA	145	68.60	b.122.1.8	121049
1xocA	520	69.17	c.94.1.1	122201
1zpuA	534	72.39		
2nutC	196	74.77		
1xyiA	66	79.42		
1wpgA	994	81.29	b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1	114806,114807,114808,114809
1iejA	332	81.98	c.94.1.2	62328
2cduA	452	82.84		
1oqkA	97	87.57	b.137.1.1	93419
1qwjA	229	88.60	c.68.1.13	96478