# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	1.71e-14		
1k82A	268	9.669	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
3bxoA	239	13.28		
2yqcA	486	14.79		
1t0aA	159	21.10	d.79.5.1	112192
2yzsA	315	23.26		
1in4A	334	28.78	a.4.5.11,c.37.1.20	62597,62598
1oqkA	97	29.57	b.137.1.1	93419
2z2iA	191	35.74		
1m4iA	181	38.08	d.108.1.1	74457
1hzdA	272	38.48	c.14.1.3	65969
1r2zA	274	44.23	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1azpA	66	44.23	b.34.13.1	37467
1l1zA	274	44.56	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
2rgqA	144	44.56		
2bvfA	459	51.86		
3c8lA	122	52.50		
1tr8A	102	53.28		
1a0pA	290	58.20	a.60.9.1,d.163.1.1	18105,42165
1zlqA	502	59.15	c.94.1.1	125253
1zcaA	359	63.79	a.66.1.1,c.37.1.8	124897,124898
1yx1A	264	64.89	c.1.15.7	124169
1dfuP	94	65.31	b.53.1.1	26936
1xocA	520	65.94	c.94.1.1	122201
1sf9A	128	67.88	b.34.15.1	98831
2auwA	170	68.59	a.35.1.10,d.331.1.1	127339,127340
1g6eA	87	69.25	b.11.1.6	60317
1mixA	206	70.24	a.11.2.1,b.55.1.5	79166,79167
1iv3A	152	71.39	d.79.5.1	76828
2e7dA	131	73.37		
1w1oA	534	75.42	d.58.32.4,d.145.1.1	109071,109072
1n67A	359	77.42	b.2.3.4,b.2.3.4	85354,85355
1jv1A	505	79.68	c.68.1.5	71892
2q35A	243	81.98		
1c8cA	64	82.01	b.34.13.1	59084
2dyoA	297	82.94		
1k3xA	262	84.87	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
1wmmA	145	85.08	b.122.1.8	121049
1gx1A	160	85.30	d.79.5.1	70675
2nutC	196	85.60		
1wz8A	264	86.90	c.14.1.3	121483
1yfnA	118	88.79	b.136.1.1	123080
2yzkA	178	89.31		
1auaA	296	89.65	a.5.3.1,c.13.1.1	16290,30882
1nzyA	269	89.92	c.14.1.3	30903