# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	1.50e-13		
2yzsA	315	7.762		
1k82A	268	12.10	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
3bxoA	239	17.70		
1yfnA	118	20.21	b.136.1.1	123080
1in4A	334	22.29	a.4.5.11,c.37.1.20	62597,62598
2auwA	170	26.56	a.35.1.10,d.331.1.1	127339,127340
1yx1A	264	28.50	c.1.15.7	124169
1tr8A	102	35.17		
1hzdA	272	38.10	c.14.1.3	65969
1oqkA	97	44.40	b.137.1.1	93419
2z2iA	191	51.19		
1vetB	125	58.20	d.110.7.1	108554
1r2zA	274	58.87	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
2yqcA	486	59.05		
1uuhA	159	62.35	d.169.1.4	100008
2rgqA	144	66.51		
1l1zA	274	67.21	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
1azpA	66	69.57	b.34.13.1	37467
1c8cA	64	70.63	b.34.13.1	59084
2e3dA	302	72.70		
1a0pA	290	75.38	a.60.9.1,d.163.1.1	18105,42165
1jysA	242	80.66	c.56.2.1	77216
1feuA	206	83.91	b.53.1.1	59801
2nutC	196	86.00		
1udmA	149	86.93	d.109.1.2	107780
1m4iA	181	87.07	d.108.1.1	74457
1ou8A	111	87.42	b.136.1.1	93543