# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bs1A	103	1.75e-13		
2yzsA	315	11.31		
1k82A	268	11.96	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
1in4A	334	22.03	a.4.5.11,c.37.1.20	62597,62598
1tr8A	102	24.96		
3bxoA	239	25.95		
2z2iA	191	27.13		
1mixA	206	27.38	a.11.2.1,b.55.1.5	79166,79167
1hzdA	272	31.27	c.14.1.3	65969
1azpA	66	31.69	b.34.13.1	37467
1a0pA	290	33.94	a.60.9.1,d.163.1.1	18105,42165
1yx1A	264	35.20	c.1.15.7	124169
1r2zA	274	39.23	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
2auwA	170	40.03	a.35.1.10,d.331.1.1	127339,127340
1m4iA	181	41.58	d.108.1.1	74457
2he7A	283	42.32		
2qe7H	135	44.31		
1yfnA	118	45.08	b.136.1.1	123080
2e5yA	133	46.55		
2nutC	196	47.10		
1zvtA	256	48.21		
1c8cA	64	51.15	b.34.13.1	59084
2dyoA	297	55.45		
1sf9A	128	56.16	b.34.15.1	98831
1l1zA	274	57.35	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
1ifqA	138	62.23	d.110.4.1	62350
1ywyA	74	64.30	b.55.2.1	124166
1wmmA	145	65.08	b.122.1.8	121049
1g6eA	87	65.29	b.11.1.6	60317
1vetB	125	66.80	d.110.7.1	108554
1xyiA	66	68.77		
1wz8A	264	73.49	c.14.1.3	121483
1eu3A	210	73.75	b.40.2.2,d.15.6.1	25206,37795
2q35A	243	77.75		
2yqcA	486	78.82		
2e7dA	131	83.45		
2capA	376	83.48		
1jv1A	505	86.03	c.68.1.5	71892
2e3dA	302	86.75		
1dfuP	94	88.42	b.53.1.1	26936
2ebjA	192	89.01